PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG024698t1

Common Name

TCM_024698

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 385aa MW: 43122.1 Da PI: 7.855

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024698t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	232	253	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg++F++++n +H+ H Thecc1EG024698t1 232 QCQTCGQRFKTQENHSKHMDWH 253 7******************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.099	231	258	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	233	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MAPEVLPPPG KRPRIVAPIP DFIPSFTNIS RSPNQPIPYF HYQNRGRIPS PSPHSFHPMQ 60 HQQGQGFMVN NPNPGVNLIL PPTMVKPVTV QDFQLQHQKE QGFAVKNPSG GVFSATTVKP 120 VQVHGLNLRQ APISCLLKPY ATMNVVPERS MPIENTPPGP PPVAPVSSQL SFPQLSSAVL 180 SELLNSVRAQ GLAKPNEETP VEDAVPLEFD AHWLKVRHES VIRSLYSDFP RQCQTCGQRF 240 KTQENHSKHM DWHVRKNREI KKKKVKPSRQ WLLTESQWLA CAEALTDTDN GDPPVFVRRD 300 SIVGMENDEE LAVRADEDQR VCALCMEAFE DFYSDETEDW MYKEAVYMRA PYGSMSAGKD 360 RSQQGPIVHA KCLPQTGKIL NNIG*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MAPEVLPPPG KRPRIVAPIP DFIPSFTNIS RSPNQPIPYF HYQNRGRIPS PSPHSFHPMQ  60
HQQGQGFMVN NPNPGVNLIL PPTMVKPVTV QDFQLQHQKE QGFAVKNPSG GVFSATTVKP  120
VQVHGLNLRQ APISCLLKPY ATMNVVPERS MPIENTPPGP PPVAPVSSQL SFPQLSSAVL  180
SELLNSVRAQ GLAKPNEETP VEDAVPLEFD AHWLKVRHES VIRSLYSDFP RQCQTCGQRF  240
KTQENHSKHM DWHVRKNREI KKKKVKPSRQ WLLTESQWLA CAEALTDTDN GDPPVFVRRD  300
SIVGMENDEE LAVRADEDQR VCALCMEAFE DFYSDETEDW MYKEAVYMRA PYGSMSAGKD  360
RSQQGPIVHA KCLPQTGKIL NNIG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976468.1	0.0	PREDICTED: polyadenylation and cleavage factor homolog 4
TrEMBL	A0A061EWV3	0.0	A0A061EWV3_THECC; PCF11P-similar protein 4
STRING	EOY09276	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG024698t1
Entrez Gene	18598963

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]