PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024695t1 | ||||||||
Common Name | TCM_024695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 29016.5 Da PI: 5.4239 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.8 | 1.2e-41 | 29 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppG+rF P+deel+++yLk+kv ++++ ++i+ev++y+++P +L + +e+ewyfF++rd+k+++g r+nrat +g+Wk++g +k++ Thecc1EG024695t1 29 PPGVRFFPSDEELLQHYLKNKVLNQPIFP-NIIQEVNLYQHHPLELTgMYKPLTETEWYFFTCRDRKHSKGCRPNRATPRGFWKQSGVEKPIP 120 9*************************877.79**************9333334788************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g kk L+fy++++++ ++tdW mheyr+ Thecc1EG024695t1 121 LDSEDAIGYKKWLIFYEKENEQVKRTDWKMHEYRI 155 *9999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-50 | 26 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.99 | 28 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 29 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEQNYQHNKL TKMQLDDATQ NDEYLNSFPP GVRFFPSDEE LLQHYLKNKV LNQPIFPNII 60 QEVNLYQHHP LELTGMYKPL TETEWYFFTC RDRKHSKGCR PNRATPRGFW KQSGVEKPIP 120 LDSEDAIGYK KWLIFYEKEN EQVKRTDWKM HEYRIHDTIS SPNKESAGNW LKVDGWVLCR 180 IFKKKEKNNE EETETFNPEV KDHDSIFDDY FSLTAENNFP YQKNNDCFDD LEEFDLKFFC 240 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-36 | 27 | 185 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028771.2 | 0.0 | PREDICTED: NAC transcription factor 56 | ||||
TrEMBL | A0A061EX88 | 1e-180 | A0A061EX88_THECC; NAC domain, IPR003441-like protein | ||||
STRING | EOY09273 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23884 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-43 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024695t1 |
Entrez Gene | 18598961 |
Publications ? help Back to Top | |||
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