PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024180t2 | ||||||||
Common Name | TCM_024180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 34673.8 Da PI: 8.583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl Thecc1EG024180t2 37 RGPWTPEEDELLASYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 84 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.7e-15 | 95 | 135 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Thecc1EG024180t2 95 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 135 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.013 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-28 | 34 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-22 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-10 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 89 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 92 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.96E-11 | 95 | 135 | No hit | No description |
Pfam | PF00249 | 9.5E-14 | 95 | 135 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MRNPATATTP ATKITTTTTR NNSGAKTPCC IKVGLKRGPW TPEEDELLAS YIKREGEGRW 60 RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWSLIAGRIP 120 GRTDNEIKNY WNTHLSKKLI NQGIDPRTHK PLNPQQSPSD LKASSSSKAN RGGATIPKPN 180 NPASSSLEET SSGQITAHKE NEYFQSNNTL HHYQTETAMA HGFTSLLNCE DSGIEMRSNK 240 NQGISNEEDE DINYCTDDVF SSFLNSLINE EAFANQNQMQ QQTNVTAQAD ALVSVTATTF 300 GLVQGWESPI M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 35 | 139 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028406.2 | 0.0 | PREDICTED: transcription repressor MYB5 | ||||
Swissprot | Q38850 | 3e-88 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A061EW76 | 0.0 | A0A061EW76_THECC; Myb domain protein 5 isoform 1 | ||||
TrEMBL | A0A061F2Z9 | 0.0 | A0A061F2Z9_THECC; Myb domain protein 5 isoform 2 (Fragment) | ||||
STRING | EOY08908 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-84 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024180t2 |
Entrez Gene | 18598703 |
Publications ? help Back to Top | |||
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