PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024180t2
Common NameTCM_024180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 311aa    MW: 34673.8 Da    PI: 8.583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024180t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-173784148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Thecc1EG024180t2 37 RGPWTPEEDELLASYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 84
                      89******************************99************97 PP

2Myb_DNA-binding475.7e-1595135648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG024180t2  95 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 135
                       89***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0133284IPR017930Myb domain
SuperFamilySSF466891.17E-2834131IPR009057Homeodomain-like
SMARTSM007174.5E-133686IPR001005SANT/Myb domain
PfamPF002499.0E-163784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-223891IPR009057Homeodomain-like
CDDcd001671.59E-103984No hitNo description
PROSITE profilePS5129424.39785139IPR017930Myb domain
SMARTSM007172.7E-1389137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2492140IPR009057Homeodomain-like
CDDcd001673.96E-1195135No hitNo description
PfamPF002499.5E-1495135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRNPATATTP ATKITTTTTR NNSGAKTPCC IKVGLKRGPW TPEEDELLAS YIKREGEGRW  60
RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWSLIAGRIP  120
GRTDNEIKNY WNTHLSKKLI NQGIDPRTHK PLNPQQSPSD LKASSSSKAN RGGATIPKPN  180
NPASSSLEET SSGQITAHKE NEYFQSNNTL HHYQTETAMA HGFTSLLNCE DSGIEMRSNK  240
NQGISNEEDE DINYCTDDVF SSFLNSLINE EAFANQNQMQ QQTNVTAQAD ALVSVTATTF  300
GLVQGWESPI M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25351395108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028406.20.0PREDICTED: transcription repressor MYB5
SwissprotQ388503e-88MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A061EW760.0A0A061EW76_THECC; Myb domain protein 5 isoform 1
TrEMBLA0A061F2Z90.0A0A061F2Z9_THECC; Myb domain protein 5 isoform 2 (Fragment)
STRINGEOY089080.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-84myb domain protein 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]