PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024016t1
Common NameTCM_024016
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 295aa    MW: 33423.2 Da    PI: 9.8425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024016t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12125171354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  Thecc1EG024016t1 125 KNHKEAEKRRRERINSHLNRLRSLLPCN-----SKTDKASLLAKVVQRVKEL 171
                       58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.713122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-11125174No hitNo description
PfamPF000103.9E-10125171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13126180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-13126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.6E-5209272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSQANKSRSH QRWGYCLPNF IQKTLKTKTT ESKSTEHTLI SLPTSKTWSK KTPSSYSYHT  60
TSMQPENSEL YRFLAQNGVG SYGFPANLEF PVMQSFSSSS TYYPLEMSGV TTETTPQDRA  120
LAALKNHKEA EKRRRERINS HLNRLRSLLP CNSKTDKASL LAKVVQRVKE LKQQTLELTE  180
LEAFPSEADE ITVLSCDYTI DGRLIFKASL CCEDRSDLLP ELIEILKSLH LKTLKAEMAT  240
LGGRIRNVLI VAADKDHSIE SVHFLQNALK SLLERSNSSD RSKRRRVLDH KIMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021297403.10.0transcription factor bHLH106
SwissprotO806747e-90BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A061F2R40.0A0A061F2R4_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY088090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]