PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG023491t8 | ||||||||
Common Name | TCM_023491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 307aa MW: 34347.6 Da PI: 9.4671 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.5 | 3.3e-09 | 17 | 61 | 1 | 45 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ek + rr+++NReAAr+sR+RKka++++Le +L++ ++L Thecc1EG023491t8 17 EKNQRTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 61 56677889************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.5E-8 | 12 | 64 | No hit | No description |
SMART | SM00338 | 1.7E-7 | 17 | 80 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-6 | 17 | 61 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.197 | 19 | 63 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.44E-7 | 21 | 64 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 24 | 39 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.5E-32 | 103 | 178 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MADASPRTDT STDDTDEKNQ RTLRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE 60 LQRARQQGIF ISSSGDQSHS MSGNGALAFD VEYARWLEEH NRQINELRAA VNSHAGDTEL 120 RTIVDNVTAH FDDIFRLKGI AAKADVFHVL SGMWKTPAER CFLWIGGFRS SELLKLLANQ 180 LEPLTEQQFM GIHNLQQSSQ QAEDALSQGM EALQQSLAET LTNGSPGPSG SSGNVANYMG 240 QMAMAMGKLG TLEGFVRQAD NLRQQTLQQM HRILTTRQSA RALLAINDYF SRLRALSSLW 300 LARPRE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028142.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38) isoform X4 | ||||
Refseq | XP_017977405.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38) isoform X2 | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A061F2B3 | 0.0 | A0A061F2B3_THECC; Transcription factor HBP-1b(C1) isoform 8 | ||||
STRING | Gorai.007G352600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-140 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG023491t8 |
Entrez Gene | 18598520 |
Publications ? help Back to Top | |||
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