PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG023491t7

Common Name

TCM_023491

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 332aa MW: 37113.6 Da PI: 9.4238

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG023491t7	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.9e-10	45	86	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Thecc1EG023491t7 45 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86 6889*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.3E-8	37	89	No hit	No description
SMART	SM00338	4.6E-9	42	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-7	46	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.38E-7	46	89	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.1E-32	128	203	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MADASPRTDT STDDTDEKNQ RFERGQTNAI VASDSSDRSK DKTDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR 120 WLEEHNRQIN ELRAAVNSHA GDTELRTIVD NVTAHFDDIF RLKGIAAKAD VFHVLSGMWK 180 TPAERCFLWI GGFRSSELLK LLANQLEPLT EQQFMGIHNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLTNGS PGPSGSSGNV ANYMGQMAMA MGKLGTLEGF VRQADNLRQQ TLQQMHRILT 300 TRQSARALLA INDYFSRLRA LSSLWLARPR E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028138.1	0.0	PREDICTED: transcription factor HBP-1b(c1) isoform X3
Refseq	XP_017977404.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X1
Swissprot	Q41558	0.0	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A061EVG7	0.0	A0A061EVG7_THECC; Transcription factor HBP-1b(C1) isoform 3
STRING	EOY08643	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-139	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG023491t7
Entrez Gene	18598520

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]