PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022984t1

Common Name

TCM_022984

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YA

Protein Properties

Length: 329aa MW: 35959.8 Da PI: 9.5901

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022984t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	97.1	2e-30	160	216	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ e+k+ +k+rkpy+h SRh hA+rRpRg+gGrF Thecc1EG022984t1 160 DGPIYVNAKQYNGIIRRRQSRAKAVLENKV-TKARKPYMHYSRHLHAMRRPRGCGGRF 216 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.4E-34	158	219	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.081	159	219	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.5E-27	162	216	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-21	162	184	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-21	193	216	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAMQTLYLKE HDGIVHNPMG QLASVPTLPW WSALGSQSVC GESCGQFKTL LMEHPSSGDQ 60 LTSTKQAGRA TEQQLNKANP TQFTIFPGDC KNSGDGHKPQ AVISLQSAPS EHHARFELGF 120 RQPMVCAKYP YMDQCYGVFS TYGPQISGRV MLPLNVATED GPIYVNAKQY NGIIRRRQSR 180 AKAVLENKVT KARKPYMHYS RHLHAMRRPR GCGGRFLNTK CSNSGKDGIK MNKAAEGKLW 240 HYAVSQNSEV LQSDSGTLNS SKEANGGGST LSGSEVTSVY SRGDLEHFPI NHLGLSVHTL 300 PRMVDNGRGT VMPSKWVATG DNCCNLKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-16	162	224	4	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028005.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBL	A0A061EVQ6	0.0	A0A061EVQ6_THECC; Nuclear transcription factor Y subunit A-10, putative
STRING	EOY08507	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-68	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Thecc1EG022984t1
Entrez Gene	18598425

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]