PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022967t1

Common Name

TCM_022967

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 290aa MW: 31897.2 Da PI: 5.5991

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022967t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.1e-37	16	70	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Thecc1EG022967t1 16 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 70 8***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-28	1	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	15	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	15	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MVMERGWKPS VEISPNCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPV 60 GGGCRKNRRG KSLRLPTDGV PSKGLSCGVL PPESIGHSYG NKVNASAESN SSSAMSDGSQ 120 IDLALVYANF LNQHAENKSG FEVSDQLPSE FDPSLEFSSL SNTNMDSSIQ LTEENGLIGC 180 FTRSDLSTEN HLSNNDRAYY SGFESVHKHQ DRVQQCTCQE TSNYALPPLP GDDLSSQETP 240 WTNSNSSMSQ TLLATQEPVL GPEVHDPNLL FGNWSLFDLS GDDAFFRIH*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021289857.1	0.0	dof zinc finger protein DOF3.5
TrEMBL	A0A061EV01	0.0	A0A061EV01_THECC; F-box family protein, putative
STRING	EOY08493	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9141	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-48	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG022967t1
Entrez Gene	18598415

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]