PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022729t1
Common NameTCM_022729
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 334aa    MW: 37346.8 Da    PI: 6.3206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022729t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.52.4e-32100202199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k ltpsdv+k++rlv+pk++ae++      +g+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++
  Thecc1EG022729t1 100 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggdSGD--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILFERHRT 190
                       99***************************955444..6779************************************************9888 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Thecc1EG022729t1 191 DGDRLFIGWRRR 202
                       9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-4294204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-3196201IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-2998192No hitNo description
SMARTSM010199.7E-27100203IPR003340B3 DNA binding domain
PROSITE profilePS5086314.128100203IPR003340B3 DNA binding domain
PfamPF023622.2E-29100202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEPTQNSPSS KLHQPSIPLE NSPWTSHFYP HQSWINSYNN PQDHPLHPSM FFPSNHPSRN  60
FNLNQDEDEE LDDQTSIDNT ENPNQNPHEN PLDHEREPMF EKPLTPSDVG KLNRLVIPKQ  120
HAEKYFPLGG DSGDKGLLLS FEDESGKCWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG  180
DIILFERHRT DGDRLFIGWR RRGAAVAVAA AADGGNAAMG NSGVGGGNEG WGRGLHQGHP  240
YLGHIQGHGA NVPYQPDCLH AGSIAQNQAP AGNPKRLLRL FGVNLECQLD ESEPSTPDSS  300
SVSSQGPTHQ SYNSNYMDIT FSRDINHMRN HRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-50952023113B3 domain-containing transcription factor NGA1
5os9_B2e-50952023113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027866.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ23e-70Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A061EUN80.0A0A061EUN8_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOY083680.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-58B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]