PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022516t2

Common Name

TCM_022516

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 435aa MW: 49096.3 Da PI: 8.751

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022516t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21	7e-07	83	140	1	58
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 eke +r rr NRe+Ar +R++a +e+L+ kv+ L+ eN+ Lk e ke+++ Thecc1EG022516t2 83 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVADLTRENENLKRAKELALKEYKS 140 799******************************************9544444455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-4	80	138	No hit	No description
SMART	SM00338	1.3E-6	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.714	85	148	IPR004827	Basic-leucine zipper domain
CDD	cd14702	6.07E-13	88	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MLTNKESDWQ MIRERQILYS IMGMPEKDVW EDRQHDQMTG NDVLIKSVKA EQNAESVKSS 60 PTCATKYMSG GGGRSRQNLT EAEKEARRLR RILANRESAR QTIRRRQALC EKLTLKVADL 120 TRENENLKRA KELALKEYKS QESTNKHLKA QMVKAIKAEE GEAPRELKLA HQISGPSRNY 180 PFYFYNQHPF PPFCWPSIVQ SSNPVQTQCE HQNAIVVSSS ISAPTNGRLD SSHDQENPIN 240 VNGPKTPLYV VPYPWFFSLP DHGNELHLRP CCGPKNNKDE TSANNRFSAG CSLKSVVHEE 300 KYNFSLPTEV EKEAYGSIEA SSNNQNCTSV RLPSDGSVQC IRYQIKEEVI LPTPLCSAGP 360 TFVVEQENTP DVNTEAARVR ACHFVGALPE ENQESTNYTT KKVLDAAAAA EARKRRKELT 420 KLKNLHGRQC RTHR*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MLTNKESDWQ MIRERQILYS IMGMPEKDVW EDRQHDQMTG NDVLIKSVKA EQNAESVKSS  60
PTCATKYMSG GGGRSRQNLT EAEKEARRLR RILANRESAR QTIRRRQALC EKLTLKVADL  120
TRENENLKRA KELALKEYKS QESTNKHLKA QMVKAIKAEE GEAPRELKLA HQISGPSRNY  180
PFYFYNQHPF PPFCWPSIVQ SSNPVQTQCE HQNAIVVSSS ISAPTNGRLD SSHDQENPIN  240
VNGPKTPLYV VPYPWFFSLP DHGNELHLRP CCGPKNNKDE TSANNRFSAG CSLKSVVHEE  300
KYNFSLPTEV EKEAYGSIEA SSNNQNCTSV RLPSDGSVQC IRYQIKEEVI LPTPLCSAGP  360
TFVVEQENTP DVNTEAARVR ACHFVGALPE ENQESTNYTT KKVLDAAAAA EARKRRKELT  420
KLKNLHGRQC RTHR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	412	417	RKRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027676.2	0.0	PREDICTED: uncharacterized protein LOC18598196 isoform X3
TrEMBL	A0A061ET43	0.0	A0A061ET43_THECC; Basic-leucine zipper transcription factor family protein, putative isoform 3
TrEMBL	A0A061EU76	0.0	A0A061EU76_THECC; Basic-leucine zipper transcription factor family protein, putative isoform 1
STRING	EOY08178	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	7e-57	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG022516t2
Entrez Gene	18598196

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]