PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022462t1 | ||||||||
Common Name | TCM_022462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 27838.4 Da PI: 7.7489 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.8e-18 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr+p+ + r++lg+f tae+Aa a++ a+++l+g Thecc1EG022462t1 94 PVYRGVRRRT-SGKWVSEIREPR----KpNRIWLGTFPTAEMAAIAYDVAALALKG 144 68*****888.8*********94....478***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-11 | 94 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 95 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.972 | 95 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-34 | 95 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 95 | 154 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.84E-31 | 96 | 154 | No hit | No description |
PRINTS | PR00367 | 2.3E-8 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MTFILVTVKY ISYMTSNETI YLHIKKLTPK FPSTINGFSR PQLQTPNLRA ISLYQIQVTM 60 HYSKSNKSSR ANTSSSSGGS ASGAGASAAT GRHPVYRGVR RRTSGKWVSE IREPRKPNRI 120 WLGTFPTAEM AAIAYDVAAL ALKGQDAELN FPNSAASLPV PASTSPRDIQ AAATSAAAAL 180 GAANDALFGN EDNEARNSPV GPDKPTTVDE FVDEDLIFDM PNVLVNMAEG MLLSPPRLDI 240 APAPAPADDA GDAENLWKFP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 85 | 154 | 4 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976767.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 7e-55 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A061ETI7 | 0.0 | A0A061ETI7_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | EOY08131 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6424 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022462t1 |
Entrez Gene | 18598164 |
Publications ? help Back to Top | |||
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