PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022428t1
Common NameTCM_022428
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 303aa    MW: 32772.4 Da    PI: 4.2734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022428t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05275298123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ Cg+sF +   L++H +  H
  Thecc1EG022428t1 275 FPCKSCGRSFGSENALQSHSKAkH 298
                       89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0052275298IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094275302IPR007087Zinc finger, C2H2
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFWGAEVKN GQIFEVELED DGSRILHLSQ VALGEVTGDN KKEKGNETVC VYLKINDEKF  60
VIGTLSQEKF PQIPLDLVLH DKFELSHTWK NGSVHFTGYY VDTSQGGDSQ SEEELPEPTI  120
NPIKPHATES DPTASKEVKI VEPKKEEDGS DDEDEDDTSA EDEESSDDQE PGMLVNGENE  180
SDDDTDSDED DSDEESSDED QETPEKAEPS KKRPAESTTK TPAPEKKAKL VTPQKTDGKK  240
VGGHTATPHP SKQAGKASAA TGQVKQNPKL GGSSFPCKSC GRSFGSENAL QSHSKAKHGA  300
AV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027608.20.0PREDICTED: histone deacetylase HDT1
TrEMBLA0A061ESU00.0A0A061ESU0_THECC; Histone deacetylase 2C, putative
STRINGEOY081100.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-28histone deacetylase 2C
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]