PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022299t1

Common Name

TCM_022299

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 289aa MW: 31451.4 Da PI: 7.4791

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022299t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	192	214	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Thecc1EG022299t1 192 HECSICGAEFSSGQALGGHMRRH 214 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.1E-9	120	145	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.598	121	148	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.81	121	143	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.19E-9	121	143	No hit	No description
PROSITE pattern	PS00028	0	123	143	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.19E-9	187	214	No hit	No description
Pfam	PF13912	7.4E-13	191	215	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	192	214	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	192	214	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	194	214	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MMMMEGQEEV VLCKDQLQII KGKRTKRPRP LSPLTLLMAS STTSSGGESG GEGGRNSDDS 60 RGLERAVASP TTSVDELTEI STEEEEDMAN CLILLAQGQT RIKPSEPASL ATTSKTGIYV 120 HQCKTCNRCF SSFQALGGHR ASHKKPKVNN EENKGLVFVR EDDDQFNNMN TALSLQITNK 180 AVLCNSSKSK VHECSICGAE FSSGQALGGH MRRHRTFTNV PTTTATTALS VGTRSPESQE 240 SKKPRTVLQL DLNLPAPEDD HHRETKFSFA SKEKLLVFSA SSLVDCHY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	29	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027469.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A061ET06	0.0	A0A061ET06_THECC; Nucleic acid binding protein, putative
STRING	EOY07971	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	4e-54	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG022299t1
Entrez Gene	18598059

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]