PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022293t1
Common NameTCM_022293
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 237aa    MW: 27520.7 Da    PI: 6.25
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022293t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W ++Ede+l+  vk+lG+++W+ +ar  g++R++k+c++rw++yl
  Thecc1EG022293t1 16 KGPWHEDEDERLITFVKLLGSRRWDYVARVSGLKRSGKSCRLRWLNYL 63
                      79********************************************97 PP
2Myb_DNA-binding51.81.9e-1672114448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++eE+++++++++++G++ W+ Iar+++ gRt++++k++w+++l
  Thecc1EG022293t1  72 ISAEEEKIILQLHERWGNK-WSMIARRLP-GRTDNEIKNYWRTHL 114
                       689****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9661163IPR017930Myb domain
SuperFamilySSF466891.61E-2714110IPR009057Homeodomain-like
SMARTSM007171.3E-121565IPR001005SANT/Myb domain
PfamPF002491.9E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201770IPR009057Homeodomain-like
CDDcd001675.01E-91863No hitNo description
PROSITE profilePS5129425.51764118IPR017930Myb domain
SMARTSM007171.4E-1468116IPR001005SANT/Myb domain
PfamPF002492.3E-1471114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2471117IPR009057Homeodomain-like
CDDcd001672.59E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAYETAAAMH GESLRKGPWH EDEDERLITF VKLLGSRRWD YVARVSGLKR SGKSCRLRWL  60
NYLRPNIKHG QISAEEEKII LQLHERWGNK WSMIARRLPG RTDNEIKNYW RTHLRKKALI  120
QEQENFQFGG DNGKQLFLFQ EDGSSAQNYN GESYKPCKDI LDTENSCYDV VGLSDFTLTS  180
SPYQTRLSDW IPEFPSDQSE IKSQHCNSSD SCYCYPAWIS EENDLWGCSG SLWNME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27141182105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027459.11e-178PREDICTED: transcription factor MYB59 isoform X2
RefseqXP_017976688.11e-178PREDICTED: transcription factor MYB59 isoform X1
SwissprotQ9SCP11e-65MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A061ESZ71e-177A0A061ESZ7_THECC; Myb domain protein 27, putative
STRINGEOY079611e-177(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.15e-68myb domain protein 27
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]