PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022255t1
Common NameTCM_022255
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 342aa    MW: 37548.7 Da    PI: 7.592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022255t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-141462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l++ +++ G+g +W + + + g++R++k+c++rw++yl
  Thecc1EG022255t1 14 KGPWSPEEDAKLKEHIEKQGTGgNWIALPPKAGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding36.21.4e-1169111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Thecc1EG022255t1  69 GEFSDDEDRIICTLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.358962IPR017930Myb domain
SuperFamilySSF466898.17E-2611109IPR009057Homeodomain-like
SMARTSM007176.3E-111364IPR001005SANT/Myb domain
PfamPF002493.7E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221569IPR009057Homeodomain-like
CDDcd001672.03E-71662No hitNo description
PROSITE profilePS5129421.82763117IPR017930Myb domain
SMARTSM007171.4E-1167115IPR001005SANT/Myb domain
PfamPF002492.6E-1069111IPR001005SANT/Myb domain
CDDcd001671.45E-770113No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEHIE KQGTGGNWIA LPPKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGM  120
APQSHRKPHH VHHASFSSLL QSSSTSSPSP SPPLSSPSST LLYNCSNNTY NTPARSFRCF  180
EVSYSSNFSN SSASCVTAAS VLQPRESLLG PTQHYRLQDG LQMFGGEASC SSSDGSCSNQ  240
ISQNKELEYE YGGARGSNGA NNGEQMGMHS YFCNEADESQ TLMASNGGCA NGWSEKSSNG  300
LWGETVPLDY GFEEIKQLIC TSSCSSFIFD ENKAEEKVMY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156441e-115HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027427.20.0PREDICTED: transcription factor RAX2
TrEMBLA0A061F0870.0A0A061F087_THECC; Myb domain protein 36
STRINGEOY079290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]