PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022240t1
Common NameTCM_022240
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family E2F/DP
Protein Properties Length: 286aa    MW: 32360.6 Da    PI: 7.1157
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022240t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.87.8e-2833115271
           E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Thecc1EG022240t1  33 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsssvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 115
                       689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.6E-12711285IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-4628120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3532115IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-2534115IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.14E-2135116IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.56E-44120223IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-44121236No hitNo description
SMARTSM011381.6E-75122283IPR014889Transcription factor DP, C-terminal
PfamPF087815.2E-43123254IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLEFSMNLTD CNFYFCSSKK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA  60
DELVAEFADP SSSVASPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS  120
LNDIEELKTE RLGRRNRIEK KAAYLQELEE QFVGLQNLIQ RNEQLYSSGN APSGGVALPF  180
ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCDRPQ SDEMAHNFSA  240
DGEGSSMSAM YQQQIPPPPR TNTPGRPPTS PPLPGILKAR VKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3926120193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977428.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-140DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A061F0770.0A0A061F077_THECC; Transcription factor DP
STRINGEOY079190.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-143Transcription factor DP
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]