PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022189t2
Common NameTCM_022189
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 480aa    MW: 53956.1 Da    PI: 9.0757
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022189t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.8e-09350397448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT  E  +lvd+++q+G g+W+ I r +      Rt+ +++++w+++l
  Thecc1EG022189t2 350 WTLAEVIKLVDGIAQYGVGRWTDIKRLLFassAYRTPVDLRDKWRNLL 397
                       ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-11342399IPR009057Homeodomain-like
PROSITE profilePS5129413.929342401IPR017930Myb domain
SMARTSM007171.7E-8346399IPR001005SANT/Myb domain
CDDcd116602.61E-17348398No hitNo description
SuperFamilySSF466892.47E-15348407IPR009057Homeodomain-like
PfamPF002492.1E-6350397IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MKTDRKPHLI KKLSDMKRQR VDESIVPGLE DEATEVEHLL AEPKSEHVSV DGVLCFGKEN  60
LEKHLKMEDF SCAFDYGWKI NCGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIHAAHDL  120
SGACEDFLLD IEFPEKFSEL EPCEGSNLHN SSSESHSPGF SGSSNSAGGI SESSIAAVQE  180
SNGRNGVLGK MVNCDVHQTF RSKCGCQAPV MDTIHPTIEN MQDLDQSDDD EKPLVSFILS  240
NKKVKSSVKV TKGGTLLRQK RVRKPTRRYI EEFSRNSTAS GKNKRLKVRS QELPQVPSES  300
RPRRGRPRKI VPKLELESDY ELSASESEDE HKRSKRSKTA CDRRKHQRMW TLAEVIKLVD  360
GIAQYGVGRW TDIKRLLFAS SAYRTPVDLR DKWRNLLRSS SALKHNRREV VENDLKHAVR  420
PLPKPVVRRI RELATIHPYP RVRSPKISPV DAPSSKHPTT TKGAPVYPHA RNLRRKKCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302308RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027366.20.0PREDICTED: uncharacterized protein LOC18597982 isoform X1
RefseqXP_017977321.10.0PREDICTED: uncharacterized protein LOC18597982 isoform X1
RefseqXP_017977322.10.0PREDICTED: uncharacterized protein LOC18597982 isoform X1
TrEMBLA0A061F0260.0A0A061F026_THECC; TRF-like 8, putative isoform 2
STRINGEOY078690.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-24TRF-like 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]