PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022189t1 | ||||||||
Common Name | TCM_022189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 479aa MW: 53857 Da PI: 9.0757 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.8e-09 | 350 | 397 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++q+G g+W+ I r + Rt+ +++++w+++l Thecc1EG022189t1 350 WTLAEVIKLVDGIAQYGVGRWTDIKRLLFassAYRTPVDLRDKWRNLL 397 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.929 | 342 | 401 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-11 | 342 | 400 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-8 | 346 | 399 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.64E-17 | 348 | 398 | No hit | No description |
SuperFamily | SSF46689 | 1.5E-15 | 348 | 412 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-6 | 350 | 397 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MKTDRKPHLI KKLSDMKRQR VDESIVPGLE DEATEVEHLL AEPKSEHVSV DGVLCFGKEN 60 LEKHLKMEDF SCAFDYGWKI NCGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIHAAHDL 120 SGACEDFLLD IEFPEKFSEL EPCEGSNLHN SSSESHSPGF SGSSNSAGGI SESSIAAVQE 180 SNGRNGVLGK MVNCDVHQTF RSKCGCQAPV MDTIHPTIEN MQDLDQSDDD EKPLVSFILS 240 NKKVKSSVKV TKGGTLLRQK RVRKPTRRYI EEFSRNSTAS GKNKRLKVRS QELPQVPSES 300 RPRRGRPRKI VPKLELESDY ELSASESEDE HKRSKRSKTA CDRRKHQRMW TLAEVIKLVD 360 GIAQYGVGRW TDIKRLLFAS SAYRTPVDLR DKWRNLLRSS SALKHNRREV ENDLKHAVRP 420 LPKPVVRRIR ELATIHPYPR VRSPKISPVD APSSKHPTTT KGAPVYPHAR NLRRKKCS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 308 | RRGRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027366.2 | 0.0 | PREDICTED: uncharacterized protein LOC18597982 isoform X1 | ||||
Refseq | XP_017977321.1 | 0.0 | PREDICTED: uncharacterized protein LOC18597982 isoform X1 | ||||
Refseq | XP_017977322.1 | 0.0 | PREDICTED: uncharacterized protein LOC18597982 isoform X1 | ||||
TrEMBL | A0A061ET86 | 0.0 | A0A061ET86_THECC; TRF-like 8, putative isoform 1 | ||||
STRING | EOY07869 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 2e-24 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022189t1 |
Entrez Gene | 18597982 |
Publications ? help Back to Top | |||
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