PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022163t1
Common NameTCM_022163
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 710aa    MW: 78133.5 Da    PI: 6.8397
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022163t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23121222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   +
  Thecc1EG022163t1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--R 209
                       89****************************996555555..89***********************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+++++r+
  Thecc1EG022163t1 210 AENGDLCIGIRRA 222
                       488889****996 PP
2Auxin_resp114.21.2e-37290373183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rW +S+Wr+L+
  Thecc1EG022163t1 290 AATLAANGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWADSPWRLLQ 373
                       68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37114227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30115228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-21120221No hitNo description
PROSITE profilePS5086313.028121223IPR003340B3 DNA binding domain
SMARTSM010195.7E-21121223IPR003340B3 DNA binding domain
PfamPF023621.9E-21121222IPR003340B3 DNA binding domain
PfamPF065071.0E-32290373IPR010525Auxin response factor
PROSITE profilePS5174520.653616699IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MITFMDSKEK LKEMEKCLDS QLWHACAGGM VQMPSVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRIPAYVLCR VASVKFMADP ETDEVFAKIG LIPVSTNDPD FEDDGIGSIH GNETQEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCIGIR RAKRCIGGGP ESSSGWNATG  240
GNCVVPYGGF SAFLREDESK LMRNGSTNGL NSNSNLMGKR KVRPEQVIEA ATLAANGQPF  300
EVVYYPRAST PEFCVKASLV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD  360
PLRWADSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHP  420
DFPLDSQLPM PTFSGNLLGP SSPFGCLPDH TPAGMQGARH AYYGLSLSDL HLKKLQSGLF  480
PAGFPPPDHA ATPNRTSNGG PIIQKPSMSE NVSCVLTMAH STQNCKKTDD AKTPQLVLFG  540
QPILTEQQIS LSCSADTVSP VLTGNSSSEG NVDKMANFSD GSGSALHQQG LPERSSCEGF  600
PWYKDNRQEA ETNLETGHCK VFMEAEDVGR TLDLSFLGSY DELYRKLADM FGIENSETLS  660
HVLYRDVTGA VKHIGDEPFS DFMKTARRLT ILMDSSSDNV GEYKGRNKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-82339432388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027336.20.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A061ET580.0A0A061ET58_THECC; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]