PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022126t1

Common Name

TCM_022126

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 363aa MW: 41161 Da PI: 5.4992

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022126t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.4e-53	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l Thecc1EG022126t1 23 LPPGFRFHPSDEELIVHYLKNKVTSSPLPA-SIIAEIDLYKYNPWELPSKALFGEDEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIL 114 79**************************.89***********87778999********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++e +g+kk Lvfy+gr p+g+kt+W+mheyrl Thecc1EG022126t1 115 TScGTESIGVKKALVFYEGRPPRGTKTEWIMHEYRL 150 9988889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-63	18	177	IPR003441	NAC domain
PROSITE profile	PS51005	60.953	23	177	IPR003441	NAC domain
Pfam	PF02365	9.3E-28	24	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLAASASASA SSMEKTPGSE IQLPPGFRFH PSDEELIVHY LKNKVTSSPL PASIIAEIDL 60 YKYNPWELPS KALFGEDEWY FFSPRDRKYP NGARPNRAAA SGYWKATGTD KPILTSCGTE 120 SIGVKKALVF YEGRPPRGTK TEWIMHEYRL RETMIWTPKR KGSMRLDDWV LCRVRQKSST 180 QRNRLGDRDI TSHEPANSYL PKLNEVWLSN SNNPNVEMAE SYLFSDCPML PYIFASQNLP 240 CFDTTTSSIS FQNSDRSCTS AQEANSDTKK LQISFSSLES LFNPSKRKSM EGDNQATNFV 300 PPSKKLIWDE TEKEEVISLS NDCSDLNFYG TDHSEGNNFS PDQWNPIMQY QELNHLEFTE 360 AC*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLAASASASA SSMEKTPGSE IQLPPGFRFH PSDEELIVHY LKNKVTSSPL PASIIAEIDL  60
YKYNPWELPS KALFGEDEWY FFSPRDRKYP NGARPNRAAA SGYWKATGTD KPILTSCGTE  120
SIGVKKALVF YEGRPPRGTK TEWIMHEYRL RETMIWTPKR KGSMRLDDWV LCRVRQKSST  180
QRNRLGDRDI TSHEPANSYL PKLNEVWLSN SNNPNVEMAE SYLFSDCPML PYIFASQNLP  240
CFDTTTSSIS FQNSDRSCTS AQEANSDTKK LQISFSSLES LFNPSKRKSM EGDNQATNFV  300
PPSKKLIWDE TEKEEVISLS NDCSDLNFYG TDHSEGNNFS PDQWNPIMQY QELNHLEFTE  360
AC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-71	14	180	8	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-71	14	180	8	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-71	14	180	8	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-71	14	180	8	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-71	14	180	11	171	NAC domain-containing protein 19
3swm_B	2e-71	14	180	11	171	NAC domain-containing protein 19
3swm_C	2e-71	14	180	11	171	NAC domain-containing protein 19
3swm_D	2e-71	14	180	11	171	NAC domain-containing protein 19
3swp_A	2e-71	14	180	11	171	NAC domain-containing protein 19
3swp_B	2e-71	14	180	11	171	NAC domain-containing protein 19
3swp_C	2e-71	14	180	11	171	NAC domain-containing protein 19
3swp_D	2e-71	14	180	11	171	NAC domain-containing protein 19
4dul_A	2e-71	14	180	8	168	NAC domain-containing protein 19
4dul_B	2e-71	14	180	8	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027296.2	0.0	PREDICTED: NAC domain-containing protein 2 isoform X1
TrEMBL	A0A061ET24	0.0	A0A061ET24_THECC; NAC domain protein, IPR003441, putative
STRING	EOY07798	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17560	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	6e-86	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Thecc1EG022126t1
Entrez Gene	18597929

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]