PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022083t2 | ||||||||
Common Name | TCM_022083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YB | ||||||||
Protein Properties | Length: 234aa MW: 25457.9 Da PI: 8.6683 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 185.1 | 5.4e-58 | 87 | 183 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk yl++yre+ Thecc1EG022083t2 87 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKNYLTRYREM 179 69******************************************************************************************* PP NF-YB 94 egek 97 eg++ Thecc1EG022083t2 180 EGDT 183 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.0E-55 | 82 | 196 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.02E-40 | 90 | 192 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-28 | 93 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.3E-20 | 121 | 139 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 124 | 140 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.3E-20 | 140 | 158 | No hit | No description |
PRINTS | PR00615 | 3.3E-20 | 159 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MKRDERTVLI NLILSSQSSP LSSLLQRPIP SLSSPRNPIS LSPALFFVFS FFPPRVFAMA 60 DAPAAPAPVS PGGGSHESGE QSPRSNVREQ DRYLPIANIS RIMKKALPAN GKIAKDAKET 120 VQECVSEFIS FITSEASDKC QKEKRKTING DDLLWAMATL GFEDYIDPLK NYLTRYREME 180 GDTKGSAKGG DASAKKDVQP SPNPQLIHQG SFSQGVNYGN SQAHLMVPMQ GTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 2e-46 | 88 | 178 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 2e-46 | 88 | 178 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY185541 | 2e-37 | AY185541.1 Gossypium barbadense clone 1__10 putative CCAAT-binding transcription factor gene, partial cds. | |||
GenBank | AY185542 | 2e-37 | AY185542.1 Gossypium barbadense clone 2__10 putative CCAAT-binding transcription factor gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021289355.1 | 1e-127 | nuclear transcription factor Y subunit B-10 isoform X2 | ||||
Swissprot | Q8VYK4 | 3e-86 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A061EZS6 | 1e-171 | A0A061EZS6_THECC; Nuclear transcription factor Y subunit B-10 isoform 2 | ||||
STRING | EOY07738 | 1e-149 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 2e-88 | nuclear factor Y, subunit B8 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022083t2 |
Entrez Gene | 18597894 |
Publications ? help Back to Top | |||
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