PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022074t3 | ||||||||
Common Name | TCM_022074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 306aa MW: 33136.5 Da PI: 8.9759 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Thecc1EG022074t3 45 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 89 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-17 | 39 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 40 | 94 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.2E-19 | 43 | 92 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.8E-7 | 43 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-12 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-9 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MNSSSSSPNP PLPPAPPPQQ SSTSANAADG SGKKVRKPYT ITKSRESWTE EEHDKFLEAL 60 QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVQKNGTIA HVPPPRPKRK AAHPYPQKAS 120 KNVLVSLQAS MAYPSSINTI APGYAPWDEA SLLVNTAPSK IMPPQDEFTS LQGAEADIGS 180 KGVARISNSG VSGIGSSSRT IPSSDMPNQG KQAPMLHGIP DFAEVYSFIG SIFDPDTQGH 240 VQKLKEMDPI NFETVLLLMR NLTVNLCSPD FEPVRKVMSS YDVSTKTVGL GTGIIPQSQT 300 NDISC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027215.2 | 0.0 | PREDICTED: protein REVEILLE 8 | ||||
Refseq | XP_007027216.2 | 0.0 | PREDICTED: protein REVEILLE 8 | ||||
Swissprot | Q8RWU3 | 1e-145 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A061ESW2 | 0.0 | A0A061ESW2_THECC; Homeodomain-like superfamily protein isoform 2 | ||||
STRING | EOY07716 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-120 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022074t3 |
Entrez Gene | 18597886 |