PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021956t2
Common NameTCM_021956
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family E2F/DP
Protein Properties Length: 291aa    MW: 32341.4 Da    PI: 7.1302
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021956t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.22.4e-2261140471
           E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        +Lr+++ +   +++k e+ g +t+ eva+e+++e               ++kn rRR+YD+lNVL+al++i++ ek+ei+wkg
  Thecc1EG021956t2  61 GGLRQFSVM---VCKKLESkGSTTYAEVADEIIEEfataqtntarsldefHEKNVRRRVYDALNVLMALDIITR-EKKEISWKG 140
                       589999999...****9999******************************999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.4E-936287IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.1E-3657145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.2E-2458140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-1761141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.6E-1962140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.6E-38148271No hitNo description
SMARTSM011384.2E-44148279IPR014889Transcription factor DP, C-terminal
PfamPF087813.8E-33149271IPR014889Transcription factor DP, C-terminal
CDDcd144581.00E-33150249IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDDPYLEDSP SCEQSPVATP SNASTSGSAR GLNQSAVKQR NASADVVDGT TRKKVSRMPG  60
GGLRQFSVMV CKKLESKGST TYAEVADEII EEFATAQTNT ARSLDEFHEK NVRRRVYDAL  120
NVLMALDIIT REKKEISWKG LSTTTQAKNL EELKALHVQL MTGIAKKAAY LKDLEEQIAG  180
LQNIIERNQQ LLKKSSAPKE GFTLPFILVQ TSPHATVEIE ISEDMQLVHL DFNSTPFSLH  240
DDAYVLKLMR YYQRPESRNT SQSSSIHSSS SSCKATVKPF YWNSETETPR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2752145193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027046.20.0PREDICTED: transcription factor-like protein DPA
RefseqXP_017976328.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY34e-91DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A061EZ500.0A0A061EZ50_THECC; Transcription factor DP isoform 1
STRINGEOY075480.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.33e-92Transcription factor DP
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]