PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021955t1

Common Name

TCM_021955

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 349aa MW: 36076 Da PI: 9.225

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021955t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.5e-38	73	132	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e a+kcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Thecc1EG021955t1 73 EVATKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 132 56789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	3.14E-5	35	44	No hit	No description
ProDom	PD007478	4.0E-33	56	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type
SuperFamily	SSF101447	3.14E-5	318	340	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MVFTSIPAYL DPANWQQHPN HQPGASSGAS AHQLPPPPPP PPPPQPHGGG GAGSIRPGSM 60 ADRARMANIP MPEVATKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW TRGGALRNVP 120 VGGGCRRNKR SKAGSSSKSP VSGDRQTASG SSSTISSNSG STADILGLGP QLPPLRFMAP 180 LHHLSEFGGS DIGLNYGTIS APLGGASDLT FQIGSALASG GAGGGGGAAA APGTSLLTMS 240 GLDQWRLQQQ APQFPFLGGL ESSSGLYQFE SGGVEPSGYG GGAGHQVRPK ISSSSATQLA 300 SVKMEDNNQQ ELNLSRQFLG VPGNDQYWSG TAWTDLSSFS SSSTSNPL*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MVFTSIPAYL DPANWQQHPN HQPGASSGAS AHQLPPPPPP PPPPQPHGGG GAGSIRPGSM  60
ADRARMANIP MPEVATKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW TRGGALRNVP  120
VGGGCRRNKR SKAGSSSKSP VSGDRQTASG SSSTISSNSG STADILGLGP QLPPLRFMAP  180
LHHLSEFGGS DIGLNYGTIS APLGGASDLT FQIGSALASG GAGGGGGAAA APGTSLLTMS  240
GLDQWRLQQQ APQFPFLGGL ESSSGLYQFE SGGVEPSGYG GGAGHQVRPK ISSSSATQLA  300
SVKMEDNNQQ ELNLSRQFLG VPGNDQYWSG TAWTDLSSFS SSSTSNPL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976252.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
TrEMBL	A0A061ET14	0.0	A0A061ET14_THECC; DNA binding with one finger 2.4, putative
STRING	EOY07547	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-49	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Thecc1EG021955t1
Entrez Gene	18597775

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]