PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021936t3 | ||||||||
Common Name | TCM_021936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 519aa MW: 57279.3 Da PI: 8.4706 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 21 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Thecc1EG021936t3 21 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 67 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.4 | 3.9e-19 | 73 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l Thecc1EG021936t3 73 KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 119 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.8 | 6.9e-15 | 125 | 168 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Thecc1EG021936t3 125 KDAWILEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 168 578999****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.819 | 16 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.89E-16 | 18 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 20 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 21 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.26E-13 | 24 | 67 | No hit | No description |
PROSITE profile | PS51294 | 32.001 | 68 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 70 | 166 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-18 | 72 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-18 | 73 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-15 | 75 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-27 | 76 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 122 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.436 | 124 | 174 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 124 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 125 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-10 | 127 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
APSSPNHRYC QRTTGPIRRA KGGWTPEEDE TLRNAVAAFK GKSWKKIAEF FPDRSEVQCL 60 HRWQKVLNPD LVKGPWTQEE DDKIIELVSR YGPTKWSVIA KSLPGRIGKQ CRERWHNHLN 120 PDIKKDAWIL EEELALMNAH RIYGNKWAEI AKVLPGRTDN AIKNHWNSSL KKKLDFYLAT 180 GKLPPVGKNG LQNGAKDMNS PAATKSLLVC SKKESDSTAQ TSSGTTDICK PEEDGKDQLE 240 SSAPVQDMAA SSSVIPNESA DTESAEGKPP SFDANPCCCN SEPGAKFESR GISSAIVEDK 300 VVETQVWRDS PTYGSLCYEP PRLQGVTSLD SDNLNKKGMR PEWTSSPITS PISFFTPPSV 360 KGSGLSAHSP EYILRFAAKS FPNTPSIFRK RKTGAQSLTL PKMGRMNEET VKNRIQLSGE 420 QERTENSLEQ APLHDGSSCE SPACQGNSSV GPKCTAFNAS PPYRLRSKRT AVFKSVERQL 480 EFTFDKERHE DNTKSSDLSM NGTSPIEDCL NATKMGVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-67 | 20 | 174 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-67 | 20 | 174 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027024.2 | 0.0 | PREDICTED: myb-related protein 3R-1 isoform X1 | ||||
Swissprot | Q6R032 | 1e-150 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
Swissprot | Q8H1P9 | 1e-150 | MB3R3_ARATH; Transcription factor MYB3R-3 | ||||
TrEMBL | A0A061ERQ0 | 0.0 | A0A061ERQ0_THECC; Myb3r3, putative isoform 3 (Fragment) | ||||
STRING | EOY07524 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 1e-153 | myb domain protein 3r-3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021936t3 |
Entrez Gene | 18597758 |
Publications ? help Back to Top | |||
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