PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG021936t2 | ||||||||
Common Name | TCM_021936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 557aa MW: 61021.5 Da PI: 8.2433 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.8e-17 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Thecc1EG021936t2 59 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.2 | 4.3e-19 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l Thecc1EG021936t2 111 KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.6 | 7.6e-15 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Thecc1EG021936t2 163 KDAWILEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 578999****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.819 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-16 | 56 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.95E-13 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 32.001 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-31 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-18 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-18 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-15 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-27 | 114 | 159 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 160 | 212 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.436 | 162 | 212 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 162 | 210 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 163 | 206 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-10 | 165 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 557 aa Download sequence Send to blast |
MAELTMEERC IENKQLTTAS SSSVSEGGGG VVVKSPGISS PAPSSPNHRR TTGPIRRAKG 60 GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVSRYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWILEE ELALMNAHRI 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVGKNGLQ NGAKDMNSPA 240 ATKSLLVCSK KESDSTAQTS SGTTDICKPE EDGKDQLESS APVQDMAASS SVIPNESADT 300 ESAEGKPPSF DANPCCCNSE PGAKFESRGI SSAIVEDKVV ETQVWRDSPT YGSLCYEPPR 360 LQGVTSLDSD NLNKKGMRPE WTSSPITSPI SFFTPPSVKG SGLSAHSPEY ILRFAAKSFP 420 NTPSIFRKRK TGAQSLTLPK MGRMNEETVK NRIQLSGEQE RTENSLEQAP LHDGSSCESP 480 ACQGNSSVGP KCTAFNASPP YRLRSKRTAV FKSVERQLEF TFDKERHEDN TKSSDLSMNG 540 TSPIEDCLNA TKMGVT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-68 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-68 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027022.2 | 0.0 | PREDICTED: myb-related protein 3R-1 isoform X2 | ||||
Swissprot | Q6R032 | 1e-165 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A061EZ27 | 0.0 | A0A061EZ27_THECC; Myb3r3, putative isoform 1 | ||||
STRING | EOY07524 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-155 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG021936t2 |
Entrez Gene | 18597758 |
Publications ? help Back to Top | |||
---|---|---|---|
|