PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021936t1
Common NameTCM_021936
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 557aa    MW: 61021.5 Da    PI: 8.2433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021936t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-1759105148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Thecc1EG021936t1  59 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                       688*****************************.************986 PP
2Myb_DNA-binding60.24.3e-19111157148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd++++++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Thecc1EG021936t1 111 KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                       79******************************.*************97 PP
3Myb_DNA-binding46.67.6e-15163206146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++W  eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Thecc1EG021936t1 163 KDAWILEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                       578999****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.81954105IPR017930Myb domain
SuperFamilySSF466897.9E-1656114IPR009057Homeodomain-like
SMARTSM007171.2E-1458107IPR001005SANT/Myb domain
PfamPF002491.5E-1559105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2261113IPR009057Homeodomain-like
CDDcd001677.95E-1362105No hitNo description
PROSITE profilePS5129432.001106161IPR017930Myb domain
SuperFamilySSF466895.62E-31108204IPR009057Homeodomain-like
SMARTSM007176.7E-18110159IPR001005SANT/Myb domain
PfamPF002491.6E-18111157IPR001005SANT/Myb domain
CDDcd001671.19E-15113157No hitNo description
Gene3DG3DSA:1.10.10.605.9E-27114159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-21160212IPR009057Homeodomain-like
PROSITE profilePS5129420.436162212IPR017930Myb domain
SMARTSM007171.2E-13162210IPR001005SANT/Myb domain
PfamPF002494.9E-13163206IPR001005SANT/Myb domain
CDDcd001671.61E-10165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAELTMEERC IENKQLTTAS SSSVSEGGGG VVVKSPGISS PAPSSPNHRR TTGPIRRAKG  60
GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVSRYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWILEE ELALMNAHRI  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVGKNGLQ NGAKDMNSPA  240
ATKSLLVCSK KESDSTAQTS SGTTDICKPE EDGKDQLESS APVQDMAASS SVIPNESADT  300
ESAEGKPPSF DANPCCCNSE PGAKFESRGI SSAIVEDKVV ETQVWRDSPT YGSLCYEPPR  360
LQGVTSLDSD NLNKKGMRPE WTSSPITSPI SFFTPPSVKG SGLSAHSPEY ILRFAAKSFP  420
NTPSIFRKRK TGAQSLTLPK MGRMNEETVK NRIQLSGEQE RTENSLEQAP LHDGSSCESP  480
ACQGNSSVGP KCTAFNASPP YRLRSKRTAV FKSVERQLEF TFDKERHEDN TKSSDLSMNG  540
TSPIEDCLNA TKMGVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-68582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-68582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027022.20.0PREDICTED: myb-related protein 3R-1 isoform X2
SwissprotQ6R0321e-165MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A061EZ270.0A0A061EZ27_THECC; Myb3r3, putative isoform 1
STRINGEOY075240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-155myb domain protein 3r-5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]