PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021911t1
Common NameTCM_021911
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 400aa    MW: 44697.5 Da    PI: 7.8226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021911t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32213269258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+vers++dp++++itYeg H h
  Thecc1EG021911t1 213 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPRCSAKKQVERSRDDPDTLIITYEGLHLH 269
                       8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.462207269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-29209269IPR003657WRKY domain
SuperFamilySSF1182902.09E-26209269IPR003657WRKY domain
SMARTSM007742.0E-36212271IPR003657WRKY domain
PfamPF031061.2E-25213269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MNLRPPQSLA ASPLWLSAPA REQTQAAKPK PTLTVKTIFV FNVCPLGFLG FTKSKPNSYK  60
TSLTLKQTTR KPSLVEDKLC CWFGFLISFW LKLVVCESAV MENGQEKAWF DGSEDELVRE  120
LLDDETPFFV LPQETVQPES KTSEEEATKR LLSTLYSGPR IEDIENALSV PTWKDQSQAQ  180
EQTRLNSILD RGLSKIENKY TLKIKCCGNG MADDGYKWRK YGQKSIKNSP NPRSYYKCTN  240
PRCSAKKQVE RSRDDPDTLI ITYEGLHLHF PYPYFSLDPP LQDDSLTKKP KKAISEAESQ  300
AFGASQTTET QAANINCEPL PSSFEGCPQG IALEGFSQQG LLEDVVPWMI RNPSRNNISS  360
NSSSCSSSHS RSPPASPSSV SWTPNYKTFF DIGINSSIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-202112691674Probable WRKY transcription factor 4
2lex_A7e-202112691674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976819.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A061ER110.0A0A061ER11_THECC; WRKY DNA-binding protein 49, putative
STRINGEOY074900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-53WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]