PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021876t1 | ||||||||
Common Name | TCM_021876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18808 Da PI: 6.398 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H++ H Thecc1EG021876t1 28 YTCSFCKKGFSNAQALGGHMNIH 50 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.87E-7 | 25 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-6 | 26 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0042 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
METKHPKVEK SDHIVWSLED LPGQAKSYTC SFCKKGFSNA QALGGHMNIH RKDRAKLRES 60 SEENILPLDM LKTINPPDDH SQVSEIILES SEEKSSSPRR PSKLSREDDG GSASVSPGGK 120 VAIKTSGESE KESLRLIHGW TSQIELDLEL RLGPDPHQDQ TTKSTRECF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN127770 | 0.0 | JN127770.1 Theobroma cacao clone TCC_BC032C24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007026943.2 | 1e-120 | PREDICTED: transcriptional regulator TAC1 | ||||
TrEMBL | A0A061EQV7 | 1e-120 | A0A061EQV7_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative | ||||
STRING | EOY07445 | 1e-121 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6991 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 3e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021876t1 |
Entrez Gene | 18597704 |
Publications ? help Back to Top | |||
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