PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021875t1

Common Name

TCM_021875

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 306aa MW: 34480.5 Da PI: 8.4819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021875t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Thecc1EG021875t1 55 YSCSFCGREFRSAQALGGHMNVH 77 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.18E-6	52	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	53	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.217	55	82	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.1E-6	55	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.002	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEQARYWMWT KRRHGLSSHL QASTYAAYDD SWEEQAFAED AAGSLGGCIW PPRSYSCSFC 60 GREFRSAQAL GGHMNVHRRD RARLKQSPTP HGETIHHHDH QNSQSHIQNP FLPMGFQYQP 120 DEVCNFVYNP NPNSDHGTLT SPSTSSRVSP PPTKENCPGK ILIPTFSSPI VQERPKTKSP 180 DSSPKSWSNL VADRYYHFSD LSTEGEKSPR ILESGCKVKA DYVQTDMSVS LNLVVRRARP 240 TTSGSREETV GCKRKRTDTP TLPFFLKPIS IERHHLQPAD LPELRPSSVD DIDLELRLGD 300 RPKVK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	5e-12	50	77	2	29	superman protein
2l1o_A	5e-12	50	77	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN127770	0.0	JN127770.1 Theobroma cacao clone TCC_BC032C24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026942.2	0.0	PREDICTED: transcriptional regulator SUPERMAN
TrEMBL	A0A061EYU3	0.0	A0A061EYU3_THECC; Zinc-finger protein 10, putative
STRING	EOY07444	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11047	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	1e-25	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG021875t1
Entrez Gene	18597703

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]