PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021796t1
Common NameTCM_021796
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 404aa    MW: 44172.7 Da    PI: 6.644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021796t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-1755100147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Thecc1EG021796t1  55 KGPWSPEEDVILSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 100
                       79******************************.***********985 PP
2Myb_DNA-binding551.8e-17107151147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r+++T eEd+ ++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 
  Thecc1EG021796t1 107 RKPFTDEEDQMIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 151
                       789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.42650105IPR017930Myb domain
SuperFamilySSF466899.35E-3153148IPR009057Homeodomain-like
SMARTSM007176.0E-1554103IPR001005SANT/Myb domain
PfamPF002494.2E-1655100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2556108IPR009057Homeodomain-like
CDDcd001678.97E-145799No hitNo description
SMARTSM007171.2E-16106154IPR001005SANT/Myb domain
PROSITE profilePS5129422.379106156IPR017930Myb domain
PfamPF002493.6E-15107151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-24109155IPR009057Homeodomain-like
CDDcd001672.52E-12109152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
METEMEAVEN GNDATVTEIN VPVAIDGGEA TEGGGDGGSR GDSAIGGRKR KERVKGPWSP  60
EEDVILSELV SKFGARNWSL IARGIAGRSG KSCRLRWCNQ LDPAVKRKPF TDEEDQMIIS  120
AHAVHGNKWA VIARLLPGRT DNAIKNHWNS TLRRRCMELG RIKSESEHMA EDASLDKTKA  180
SSEETLSCAE DSSFRSMEGK DVSSLEKLDT QLKGKSLTGI QSSHESIEPP TLFRPVARVS  240
AFNVYNHVDR PEFVLPCSRP VLMQGPLIQT SKPDVGICKL HEGVYKEGIV PLQCGHGCCG  300
TQNVRNGNSN SLLGPEFVEF SEPPSFPNYE LAAIASDISN LAWLKSGLEN NSVRPMDDAA  360
GGTTSHRSQV CTGHFEKTRM SDHFHIEERN KKLMGRMTNL LST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39541556107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1277690.0JN127769.1 Theobroma cacao clone TCC_BC028B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026835.20.0PREDICTED: myb-related protein B
SwissprotQ425751e-108MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A061ESG90.0A0A061ESG9_THECC; R2r3-myb transcription factor, putative
STRINGEOY073370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-109myb domain protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]