PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021628t1
Common NameTCM_021628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 369aa    MW: 41301.6 Da    PI: 8.8429
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021628t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-3263116255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtp+LH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Thecc1EG021628t1  63 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 116
                       8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.11359119IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-3059117IPR009057Homeodomain-like
SuperFamilySSF466898.06E-1561117IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-2363118IPR006447Myb domain, plants
PfamPF002491.1E-964115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEGNNGTECS KTSPSKQNQA ESESTEENDG ESRPKNGGSS SNSTVEENEK KPSVRPYVRS  60
KMPRLRWTPD LHLRFIHAVE RLGGQDRATP KLVLQLMNIK GLSIAHVKSH LQMYRSKKID  120
DPGQVITEHR HLVESGDRNI YNLSQLPMLQ GYNNHHHGDS SSSFRYGDAS WNGQECLQRN  180
PYSSRSFIDE PRPGLHGTMT ERIFGSKSTS NWSNYSLRMG SSSFNALPSW KSHELKNEFP  240
SSHNLESFRT QPRSGAIELN PTSQTQAKVE EHISFGRSIG PSDANKTNAQ ECKAMKRKAP  300
DCNLDLDLSL RLTQVNEESQ RRSKEDDVGS ELSLSLYSPS SSSKLSRLKG EDHSKESARR  360
VSTLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1664118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1664118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1664118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1664118357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1664118458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976241.10.0PREDICTED: probable transcription factor RL9
TrEMBLA0A061ERX50.0A0A061ERX5_THECC; Myb-like HTH transcriptional regulator family protein, putative isoform 1
STRINGEOY071170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-70G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]