PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021628t1 | ||||||||
Common Name | TCM_021628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 369aa MW: 41301.6 Da PI: 8.8429 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 63 | 116 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Thecc1EG021628t1 63 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 116 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.113 | 59 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-30 | 59 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.06E-15 | 61 | 117 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-23 | 63 | 118 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 64 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEGNNGTECS KTSPSKQNQA ESESTEENDG ESRPKNGGSS SNSTVEENEK KPSVRPYVRS 60 KMPRLRWTPD LHLRFIHAVE RLGGQDRATP KLVLQLMNIK GLSIAHVKSH LQMYRSKKID 120 DPGQVITEHR HLVESGDRNI YNLSQLPMLQ GYNNHHHGDS SSSFRYGDAS WNGQECLQRN 180 PYSSRSFIDE PRPGLHGTMT ERIFGSKSTS NWSNYSLRMG SSSFNALPSW KSHELKNEFP 240 SSHNLESFRT QPRSGAIELN PTSQTQAKVE EHISFGRSIG PSDANKTNAQ ECKAMKRKAP 300 DCNLDLDLSL RLTQVNEESQ RRSKEDDVGS ELSLSLYSPS SSSKLSRLKG EDHSKESARR 360 VSTLDLTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-16 | 64 | 118 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976241.1 | 0.0 | PREDICTED: probable transcription factor RL9 | ||||
TrEMBL | A0A061ERX5 | 0.0 | A0A061ERX5_THECC; Myb-like HTH transcriptional regulator family protein, putative isoform 1 | ||||
STRING | EOY07117 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-70 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021628t1 |
Entrez Gene | 18597485 |
Publications ? help Back to Top | |||
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