PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021482t1

Common Name

TCM_021482

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SBP

Protein Properties

Length: 1033aa MW: 114540 Da PI: 7.9562

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021482t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.9	1.8e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska ++lv ++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Thecc1EG021482t1 148 VCQVEDCRADLSNAKDYHRRHKVCDMHSKAGKALVGTVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.3E-32	142	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.847	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-37	147	228	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-28	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.58E-8	798	913	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-8	801	925	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.00E-8	802	913	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MDSKFGGKPH HVYGPMVSDL KAVEKKSVEW DLNDWKWDGD LFTATPLNSV PLDCRSRQLF 60 PVGPETPANA GSSHTSSSCS EHNNPGNEKG KREVEKRRRV VVAEDEEVNA DSASLNLKLG 120 GQIYPIMDDD AKCGKKTKVT GAASSRAVCQ VEDCRADLSN AKDYHRRHKV CDMHSKAGKA 180 LVGTVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDNVAT AGSLNDERSS 240 SYLLISLLRI LSNMHSNNSD QTKDQDLLSH LLRSLASLGG AIDGRNVSGL LQGSQGVVNA 300 ARAVGNLEKV TDVVSNGSEH ARPSGSASKI DDSANIPDWQ GSMGHCGTLP ASNLAQRRSA 360 NNDVQDGSLS GSPFKMPIPS GGGPPFGANA PEATVGRIRM NNIDLNNVYD DSQDYVENLE 420 RSLVLKNPVN ETLHSSVRVP ESHKSSPPQL SANSDSTSSQ SPSTSSGEAQ SRTDQIVFKL 480 FGKDPNGFPI ALRRQILDWL SHSPTDIESY IRPGCVILTI YLRLRESAWE ELCFDLGSSL 540 RRLVDVSNNS FWKTGWLYAR VQHSIAFIYN GRVVLDTPLP LKSHKCCRIS SIKPIAVSVT 600 ERAQFIVKGF NLNRSSTRLL CAIEGKYLVQ ETCYDLMQVI DPVNEQDELQ SLCFLCSIPD 660 VSGRGFIEVE DHGLSSTFFP FIVAEQEVCS EICTLEGVIE TAVPTVDINK NAEKMESKNQ 720 ALDFIHEMGW LLHRNHLHWR LGRLNPNSNL FPFRRFEWLM EFSMDHEWCA VVKKLLGILF 780 DGTVDLGDHS SIEYALLDMC LLHRAVRRNC RPMVELLLRY VPDKVLDKPG SEQKPLVDVN 840 YNGFIFKPNV AGPAGLTPLH VAASKEGSEN VLDALTDDPG LVAVEAWKSA RDSTGLTPND 900 YACLRGHYSY IHLVQRKINK RSECGHVVLD ISGTRLDCNS KQKLSDGTRV AKAASLETEK 960 IKMKARHQRC RACEQKLTYG NSRTSLVYRP AMLSMVAIAA VCVCVALLFK SSPEVLYVFR 1020 PFRWELLKYG SS*

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MDSKFGGKPH HVYGPMVSDL KAVEKKSVEW DLNDWKWDGD LFTATPLNSV PLDCRSRQLF  60
PVGPETPANA GSSHTSSSCS EHNNPGNEKG KREVEKRRRV VVAEDEEVNA DSASLNLKLG  120
GQIYPIMDDD AKCGKKTKVT GAASSRAVCQ VEDCRADLSN AKDYHRRHKV CDMHSKAGKA  180
LVGTVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDNVAT AGSLNDERSS  240
SYLLISLLRI LSNMHSNNSD QTKDQDLLSH LLRSLASLGG AIDGRNVSGL LQGSQGVVNA  300
ARAVGNLEKV TDVVSNGSEH ARPSGSASKI DDSANIPDWQ GSMGHCGTLP ASNLAQRRSA  360
NNDVQDGSLS GSPFKMPIPS GGGPPFGANA PEATVGRIRM NNIDLNNVYD DSQDYVENLE  420
RSLVLKNPVN ETLHSSVRVP ESHKSSPPQL SANSDSTSSQ SPSTSSGEAQ SRTDQIVFKL  480
FGKDPNGFPI ALRRQILDWL SHSPTDIESY IRPGCVILTI YLRLRESAWE ELCFDLGSSL  540
RRLVDVSNNS FWKTGWLYAR VQHSIAFIYN GRVVLDTPLP LKSHKCCRIS SIKPIAVSVT  600
ERAQFIVKGF NLNRSSTRLL CAIEGKYLVQ ETCYDLMQVI DPVNEQDELQ SLCFLCSIPD  660
VSGRGFIEVE DHGLSSTFFP FIVAEQEVCS EICTLEGVIE TAVPTVDINK NAEKMESKNQ  720
ALDFIHEMGW LLHRNHLHWR LGRLNPNSNL FPFRRFEWLM EFSMDHEWCA VVKKLLGILF  780
DGTVDLGDHS SIEYALLDMC LLHRAVRRNC RPMVELLLRY VPDKVLDKPG SEQKPLVDVN  840
YNGFIFKPNV AGPAGLTPLH VAASKEGSEN VLDALTDDPG LVAVEAWKSA RDSTGLTPND  900
YACLRGHYSY IHLVQRKINK RSECGHVVLD ISGTRLDCNS KQKLSDGTRV AKAASLETEK  960
IKMKARHQRC RACEQKLTYG NSRTSLVYRP AMLSMVAIAA VCVCVALLFK SSPEVLYVFR  1020
PFRWELLKYG SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-29	148	222	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974928.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A061EPW1	0.0	A0A061EPW1_THECC; Squamosa promoter-binding protein, putative isoform 1
STRING	EOY06896	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Thecc1EG021482t1
Entrez Gene	18603759

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]