PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021468t1
Common NameTCM_021468
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CAMTA
Protein Properties Length: 967aa    MW: 107100 Da    PI: 6.8288
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021468t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.89.7e-54161323118
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       +e ++rwl++ e+++iL n+ k++l+ +++ +p+ gsl L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK+g+v+vl+cyYah++ n++f
  Thecc1EG021468t1  16 QEaQHRWLRPVEVCEILSNYPKFRLSDKPPVKPPAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVKEAHEKLKIGSVDVLHCYYAHGQFNENF 108
                       5559***************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       qrrcyw+L+ ++e+iv+vhy+evk
  Thecc1EG021468t1 109 QRRCYWMLDGQFEHIVFVHYREVK 132
                       *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.11611137IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7214132IPR005559CG-1 DNA-binding domain
PfamPF038597.0E-4817130IPR005559CG-1 DNA-binding domain
CDDcd001020.00284432520No hitNo description
Gene3DG3DSA:2.60.40.103.6E-5433522IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.01E-16433519IPR014756Immunoglobulin E-set
PfamPF018331.4E-4433518IPR002909IPT domain
CDDcd002044.90E-14603714No hitNo description
Gene3DG3DSA:1.25.40.201.6E-15603718IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.67E-16607717IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.573622716IPR020683Ankyrin repeat-containing domain
SMARTSM002480.038655684IPR002110Ankyrin repeat
PROSITE profilePS5008810.152655687IPR002110Ankyrin repeat
SMARTSM00248450694723IPR002110Ankyrin repeat
SMARTSM00015160774796IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.95E-9774879IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.9828850IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.059829858IPR000048IQ motif, EF-hand binding site
PfamPF006120.06832849IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.725852880IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5855873IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MHQGLNARAD LQQILQEAQH RWLRPVEVCE ILSNYPKFRL SDKPPVKPPA GSLYLFDRKT  60
IRYFRKDGHD WRKKKDGKTV KEAHEKLKIG SVDVLHCYYA HGQFNENFQR RCYWMLDGQF  120
EHIVFVHYRE VKEGYRSGIS RILADPGSQS ESLQTGSAPS LAHENSPAPT VQTSHASTSR  180
IDWNGQTLSS EFEDVDSGDY PSTSSPVQPI YGSTSCTASL EPEVAGRNPP GSWFAGSNCN  240
NSSESCFWPE IHHSVADTIS MPDQKLYVER PTTGDFITHK EAEVRLHDVS DVVTRGDKLI  300
SDVEAQAAGE SPQKVIEVPQ AYGFGLMGLL SQNYSGPQKV VSSSAQIENE SKGSGLNNDE  360
PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWNTLDT ETDDKEVSSL SHHMQLDVDS  420
LGPSLSQEQL FSIVDFSPDW AYSGVETKVL IIGNFLRTKE LSSAAKWGCM FGEIEVSAEV  480
LTNHVIRCQV PSHAPGCVPF YVTCSNRLAC SEVREFEYRE KPPGFSFTKA VKSTAAEEMH  540
LHVRLAKLLD IGPGRKWLDC SVEECDKCRL KNNIYSMEVA NANESIQSKD GLIQNLLKER  600
LCEWLLYKVH EDGKGPHILD DKGQGVIHLA ASLGYEWAMG PIVAAGISPN FRDAQGRTGL  660
HWASYFGREE TVIALIKLGA APGAVDDPTP SFPGGRTAAD LASSRGHKGI AGYLAEADLI  720
THLSSLTVNE NVVGNDAATT AAEEAIESAA QVAPSNGALD EHCSLKGSLA AVRKSAHAAA  780
LIQAAFRALS FRDRQLTEGN DEMSEVSLEL GLLGSLNRLP KMSHFGDYLH IAAAKIQQKY  840
RGWKGRKEFL KIRNRIVKIQ AHVRGHQVRK QYKKVVWSVS IVEKVILRWR RKGAGLRGFR  900
VQKSIENAAP EIEIGDEYEF LRLGRQQKVR GVEKALARVK SMARDQEARD QYMRLATKFG  960
ESKCTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035949.20.0PREDICTED: calmodulin-binding transcription activator 1 isoform X3
TrEMBLA0A061EX730.0A0A061EX73_THECC; Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains, putative isoform 1
STRINGEOY068740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]