PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021433t2
Common NameTCM_021433
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 268aa    MW: 30039.2 Da    PI: 8.6034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021433t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-162770146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      rg+ T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Thecc1EG021433t2 27 RGNITLEEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 70
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.148121IPR017930Myb domain
SuperFamilySSF466891.45E-20780IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-10733IPR009057Homeodomain-like
PROSITE profilePS5129422.7462276IPR017930Myb domain
SMARTSM007178.3E-142674IPR001005SANT/Myb domain
PfamPF002491.7E-142770IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-183471IPR009057Homeodomain-like
CDDcd001671.84E-74770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKVKSLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQQLPGRT  60
DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL AERIQAAAAA ATATSSTSVT  120
TTSASATTTA PNVGTGQMVL PHGVLGNDFG RAQVTPSYTP ENSSTAASSD SFGTQVSPVS  180
DLTTDYYSNI PVSNNPNPDN YFQASQAGYS DSLISPSGNY YNHGMDFQSM EQNNTNNPWL  240
DGGDDASDNF FNPEDFYFLQ QQFNFNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1747435106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035893.21e-171PREDICTED: transcription factor MYB108 isoform X2
SwissprotQ9FGY32e-67MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A061EX270.0A0A061EX27_THECC; Myb domain protein 112 isoform 2
STRINGEOY068180.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-64myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]