PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021433t1
Common NameTCM_021433
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 316aa    MW: 35447.1 Da    PI: 6.363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021433t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-192269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Thecc1EG021433t1 22 RGPWTVEEDFKLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 69
                      89********************************************97 PP
2Myb_DNA-binding49.41.1e-1575118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Thecc1EG021433t1  75 RGNITLEEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 118
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3831769IPR017930Myb domain
SuperFamilySSF466897.19E-3119116IPR009057Homeodomain-like
SMARTSM007174.9E-162171IPR001005SANT/Myb domain
PfamPF002497.7E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-232376IPR009057Homeodomain-like
CDDcd001672.91E-132469No hitNo description
PROSITE profilePS5129422.74670124IPR017930Myb domain
SMARTSM007178.3E-1474122IPR001005SANT/Myb domain
PfamPF002492.2E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2277123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDVKARGCSA DVQSEEEMDL RRGPWTVEED FKLINYIATH GEGRWNSLAR CAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI AQQLPGRTDN EIKNYWRTRV  120
QKHAKQLKCD VNSKQFKDTM RYLWMPRLAE RIQAAAAAAT ATSSTSVTTT SASATTTAPN  180
VGTGQMVLPH GVLGNDFGRA QVTPSYTPEN SSTAASSDSF GTQVSPVSDL TTDYYSNIPV  240
SNNPNPDNYF QASQAGYSDS LISPSGNYYN HGMDFQSMEQ NNTNNPWLDG GDDASDNFFN  300
PEDFYFLQQQ FNFNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251911624120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035892.20.0PREDICTED: transcription factor MYB108 isoform X1
SwissprotQ9FGY37e-96MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A061EQ770.0A0A061EQ77_THECC; Myb domain protein 112 isoform 1
STRINGEOY068180.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-93myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]