PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021400t2 | ||||||||
Common Name | TCM_021400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 38691.9 Da PI: 6.1141 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.7 | 1.8e-21 | 200 | 251 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++p sagC vkk+vers++dp+vv++tYeg+H+h+ Thecc1EG021400t2 200 LDDGYRWRKYGQKAVKNSPYP-------SAGCGVKKRVERSSDDPTVVVTTYEGQHTHP 251 59*******************.......57****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-24 | 185 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-20 | 192 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.076 | 195 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-28 | 200 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-16 | 201 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEKKKPEGEK RENSMANLRF SDENPAASGF GGSIFDMAAG ACEGSGGDKW GTLGFMDLLG 60 IHQDFAAPSL FDSFQPPILS SSPPPPPPPS SSELHQEILH ELQLENKQLI QKQQQLQGLP 120 SPASTVPESS EVLNNPATPN SSSISSSSNE AANDEQTKTG DDEEQDQDKT KKQLKPKKKN 180 QKRQREPRFA FMTKSEVDHL DDGYRWRKYG QKAVKNSPYP SAGCGVKKRV ERSSDDPTVV 240 VTTYEGQHTH PCPITPRGSI GISPDSSTFG AASAASFIVP QPQYLHQQQP YIYTSLPPLN 300 ITTATATSSS FINPSFPAFL QERRVAPPSA SSLRDHGLLQ DIVPSQMRNE AKEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 193 | 253 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 193 | 253 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007035842.2 | 0.0 | PREDICTED: probable WRKY transcription factor 48 | ||||
Swissprot | Q9FGZ4 | 4e-56 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A061EWY6 | 0.0 | A0A061EWY6_THECC; WRKY DNA-binding protein 48, putative isoform 2 | ||||
STRING | EOY06768 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 4e-46 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021400t2 |
Entrez Gene | 18603683 |
Publications ? help Back to Top | |||
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