PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021400t1
Common NameTCM_021400
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 362aa    MW: 39622 Da    PI: 6.5184
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021400t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33200258159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp+vv++tYeg+H+h+
  Thecc1EG021400t1 200 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPTVVVTTYEGQHTHP 258
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-35185260IPR003657WRKY domain
SuperFamilySSF1182908.24E-30192260IPR003657WRKY domain
PROSITE profilePS5081133.488195260IPR003657WRKY domain
SMARTSM007742.3E-40200259IPR003657WRKY domain
PfamPF031061.3E-27201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEKKKPEGEK RENSMANLRF SDENPAASGF GGSIFDMAAG ACEGSGGDKW GTLGFMDLLG  60
IHQDFAAPSL FDSFQPPILS SSPPPPPPPS SSELHQEILH ELQLENKQLI QKQQQLQGLP  120
SPASTVPESS EVLNNPATPN SSSISSSSNE AANDEQTKTG DDEEQDQDKT KKQLKPKKKN  180
QKRQREPRFA FMTKSEVDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTSAG CGVKKRVERS  240
SDDPTVVVTT YEGQHTHPCP ITPRGSIGIS PDSSTFGAAS AASFIVPQPQ YLHQQQPYIY  300
TSLPPLNITT ATATSSSFIN PSFPAFLQER RVAPPSASSL RDHGLLQDIV PSQMRNEAKE  360
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-281932601077Probable WRKY transcription factor 4
2lex_A3e-281932601077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6095901e-130JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBankKF6698551e-130KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035842.20.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ41e-65WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A061EQ420.0A0A061EQ42_THECC; WRKY DNA-binding protein 48, putative isoform 1
STRINGEOY067680.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-55WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]