PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021347t1
Common NameTCM_021347
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 153aa    MW: 17540.2 Da    PI: 8.0666
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021347t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-102460541
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                      k+ +r+ +NRe+ArrsR +K++ +e L ++v++L  e
  Thecc1EG021347t1 24 KKRKRMLSNRESARRSRMKKQKLLEDLVREVASLNVE 60
                      899******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-92084IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.0E-622102No hitNo description
PROSITE profilePS502179.0482260IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.81E-92479No hitNo description
PfamPF001708.0E-82460IPR004827Basic-leucine zipper domain
CDDcd147023.83E-152575No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006521Biological Processregulation of cellular amino acid metabolic process
GO:0009651Biological Processresponse to salt stress
GO:0009901Biological Processanther dehiscence
GO:0010182Biological Processsugar mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSNPLPQTSS GSEADARCMA MDEKKRKRML SNRESARRSR MKKQKLLEDL VREVASLNVE  60
ICRNADNYEI LMQKTFVLES ENNLLKAQKL ELAQYLRNLE LMQTHMDLLQ MNLMQPGSFS  120
DRTADIKEPH LESWQCHGSG QPIMASVGMF NY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035774.11e-110PREDICTED: bZIP transcription factor 53
TrEMBLA0A061ENX01e-109A0A061ENX0_THECC; Basic leucine-zipper 1, putative
STRINGEOY067001e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30362763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-23basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]