PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021318t1
Common NameTCM_021318
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 416aa    MW: 46310.4 Da    PI: 5.2038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021318t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-172168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rgrWT+eEde+l ++++  G g+W++ +++ g+ R++k+c++rw +yl
  Thecc1EG021318t1 21 RGRWTAEEDEILTQYIQANGEGSWRSLPKHAGLLRCGKSCRLRWINYL 68
                      8*******************************99************97 PP
2Myb_DNA-binding47.63.8e-1574119148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T++E+e +v++ + lG++ W++Ia+ ++ gRt++++k++w+++l
  Thecc1EG021318t1  74 RGNITAQEEETIVKLRAALGNR-WSLIAAQLP-GRTDNEIKNYWNSHL 119
                       7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-221271IPR009057Homeodomain-like
PROSITE profilePS5129416.571668IPR017930Myb domain
SuperFamilySSF466894.03E-2718115IPR009057Homeodomain-like
SMARTSM007171.3E-122070IPR001005SANT/Myb domain
PfamPF002496.4E-152168IPR001005SANT/Myb domain
CDDcd001676.26E-92368No hitNo description
PROSITE profilePS5129423.2169123IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2372123IPR009057Homeodomain-like
SMARTSM007171.1E-1473121IPR001005SANT/Myb domain
PfamPF002493.8E-1374119IPR001005SANT/Myb domain
CDDcd001675.11E-978119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MREEKREMGR SPCCEKVGLK RGRWTAEEDE ILTQYIQANG EGSWRSLPKH AGLLRCGKSC  60
RLRWINYLRA DLKRGNITAQ EEETIVKLRA ALGNRWSLIA AQLPGRTDNE IKNYWNSHLS  120
RKIYRFTKTI KDTKPGEIDI ITTAEECKRT GGRTSRSAMK RQKLALLSFG IPKNDLTPNE  180
EMESAAQGNT IPGAPIQDRK IMKNLQPNEN HDEDPISAVA GRRNIGIMHG SCMHSSAGKA  240
GNYDESKSRG IALSSGEESC SAVETYGSCS ERESEEVLGP YEWLDSEIKR LSSVLQSEGV  300
DPSGNRGFTP NVENGARVIS EDRVNGVQRG AQKDEERESC GIWSSNAEII GKAGEYQMSS  360
FSSPAETSWF DKDWLDWDSA AGFGQCRDAD QWELWDDSDK VLCQLWDDGK GDEAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221912325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035735.20.0PREDICTED: uncharacterized protein LOC18603604
TrEMBLA0A061EPA60.0A0A061EPA6_THECC; Myb domain protein 111, putative
STRINGEOY066610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-77myb domain protein 111
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]