PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021317t1
Common NameTCM_021317
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 401aa    MW: 45324.5 Da    PI: 5.386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021317t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rgrWT+eEde l +++++ G g+Wk+ ++  g+ R++k+c++rw +yl
  Thecc1EG021317t1 14 RGRWTAEEDEALTKYIQLNGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61
                      8*******************************99************97 PP
2Myb_DNA-binding55.31.5e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T++E+e +v+++  lG++ W++Ia++++ gRt++++k++w ++l
  Thecc1EG021317t1  67 RGNFTAQEEETIVKLHSTLGNR-WSLIAAELP-GRTDNEIKNYWKTHL 112
                       89********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.282961IPR017930Myb domain
SuperFamilySSF466895.87E-2911108IPR009057Homeodomain-like
SMARTSM007174.3E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001675.44E-91661No hitNo description
PROSITE profilePS5129427.17562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2665116IPR009057Homeodomain-like
SMARTSM007173.5E-1766114IPR001005SANT/Myb domain
PfamPF002499.3E-1667112IPR001005SANT/Myb domain
CDDcd001674.38E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGRSPCCEKV GLKRGRWTAE EDEALTKYIQ LNGEGSWKSL PKNAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TAQEEETIVK LHSTLGNRWS LIAAELPGRT DNEIKNYWKT HLRRKIYSFT  120
KKVHNGSPTV EAVRIGELAQ KRRGRTSRAN MKRQKLALMS LGKANKNNTP EETNIIGQME  180
GTDIVRDLQP TDLGARGCCM NSGARTVDGR INDESERPAI CSGDESCNSI AAQVMFDCET  240
DVFGPYEWLD SEIQRLSVVL KSECAEVSPS GDGCFDPKEE NGGIMVTTEE MDKEIPAVQE  300
TKSKSHHDEE IRGSCSINWN SDCGRSCGES QVRRSSPSDP WFDEGWLGWD LDQADALGFC  360
SHDPWDDLKY FQSVHQNHQW ESWDDLIYFQ SVDENDHRSM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035734.20.0PREDICTED: uncharacterized protein LOC18603603
TrEMBLA0A061ENT60.0A0A061ENT6_THECC; Myb domain protein 111, putative
STRINGEOY066600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-72myb domain protein 111
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]