PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021168t4
Common NameTCM_021168
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 798aa    MW: 89818.4 Da    PI: 9.9331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021168t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-094777335
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgR 35
                       WT+eE e++++a +++G++ Wk++a  +  +R
  Thecc1EG021168t4 47 QWTKEELERFYEAYRKYGKD-WKKVATVVR-NR 77
                      6*****************99.*****9998.77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-84479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-54779IPR009057Homeodomain-like
PfamPF002497.6E-84778IPR001005SANT/Myb domain
CDDcd001671.11E-54877No hitNo description
PfamPF065843.6E-32574674IPR033471DIRP domain
SMARTSM011352.3E-55574675IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATVVRNRQPS KSLDKSFPDL LQFHSAASSY GCLSLLKRRR SESRPRAVGK  120
RTPRVPISFS HDKNKGERYF SPIRQGMKLK VDTVDDDVAH EIALVLTEAS QRGGSPQVSR  180
TPNRKAEASS PILNSERMNA ESETTSAKIH GSEMDEDACE LSLGSTEADN ADYARGKNYS  240
MNIEGTGTIE VQQKGKRYYR RKPGVEESVN NHLEDTKEAC SGTEEDQKLC DFKGKFEAEV  300
ADTKPSRGSI KGLRKRSKKV LFGRVEDTSF DALQTLADLS LMMPETAADT ESSVQFKEEK  360
NEVVEKTKLK GNHPVSGAKG TAPKTCKQGK VFGHDVRAIP EAKEETHPGN VGMRKRRQKS  420
SPYKLQIPKD ETDADSHLGE SRNIEALDEV KNFPSKGKRS NNVAHSKQGK SVRPPEHRSS  480
STDHGRDLNN STPSTIQVSP VNQVNLPTKV RSKRKIDAQK QVIGKDIKSS DGIVKGKFSV  540
PVSLFHDRAL NLKEKLCNFL CPYQARRWCT FEWFCSTIDY PWFAKREFVE YLDHVGLGHV  600
PRLTRVEWGV IRSSLGKPRR FSEQFLKEER EKLYQYRESV RTHYAELRAG IGEGLPTDLA  660
RPLSVGQRVI AIHPKTREIH DGNVLIVDHS RYRIQFDSTE LGVESVMDID CMALNPLENL  720
PASLVRQNAA VRKFFENYNE LKMNGQPKES KMEENIKFAP CEENANSPSR TSPSTFSVGN  780
LSQPVKVSYD CKMVLVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412417MRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035525.20.0PREDICTED: protein ALWAYS EARLY 3 isoform X3
RefseqXP_007035526.20.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A061EW030.0A0A061EW03_THECC; Always early, putative isoform 4
STRINGEOY064520.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]