PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021168t2

Common Name

TCM_021168

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 1187aa MW: 132274 Da PI: 9.1989

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021168t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.6e-10	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk++a + +R+ +++ Thecc1EG021168t2 47 QWTKEELERFYEAYRKYGKD-WKKVATVVR-NRSVEMV 82 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.496	43	96	IPR017884	SANT domain
SuperFamily	SSF46689	5.91E-11	44	91	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-6	44	92	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-5	47	81	IPR009057	Homeodomain-like
Pfam	PF00249	4.5E-9	47	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.84E-7	48	82	No hit	No description
Pfam	PF06584	6.1E-32	642	742	IPR033471	DIRP domain
SMART	SM01135	2.3E-55	642	743	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1187 aa Download sequence Send to blast
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV ATVVRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD 120 SEQESNEGVG ASRKPQKRSR GKLRDQPSKS LDKSFPDLLQ FHSAASSYGC LSLLKRRRSE 180 SRPRAVGKRT PRVPISFSHD KNKGERYFSP IRQGMKLKVD TVDDDVAHEI ALVLTEASQR 240 GGSPQVSRTP NRKAEASSPI LNSERMNAES ETTSAKIHGS EMDEDACELS LGSTEADNAD 300 YARGKNYSMN IEGTGTIEVQ QKGKRYYRRK PGVEESVNNH LEDTKEACSG TEEDQKLCDF 360 KGKFEAEVAD TKPSRGSIKG LRKRSKKVLF GRVEDTSFDA LQTLADLSLM MPETAADTES 420 SVQFKEEKNE VVEKTKLKGN HPVSGAKGTA PKTCKQGKVF GHDVRAIPEA KEETHPGNVG 480 MRKRRQKSSP YKLQIPKDET DADSHLGESR NIEALDEVKN FPSKGKRSNN VAHSKQGKSV 540 RPPEHRSSST DHGRDLNNST PSTIQVSPVN QVNLPTKVRS KRKIDAQKQV IGKDIKSSDG 600 IVKGKFSVPV SLFHDRALNL KEKLCNFLCP YQARRWCTFE WFCSTIDYPW FAKREFVEYL 660 DHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLKEEREK LYQYRESVRT HYAELRAGIG 720 EGLPTDLARP LSVGQRVIAI HPKTREIHDG NVLIVDHSRY RIQFDSTELG VESVMDIDCM 780 ALNPLENLPA SLVRQNAAVR KFFENYNELK MNGQPKESKM EENIKFAPCE ENANSPSRTS 840 PSTFSVGNLS QPVKVDPSSP NLQLKVGPME TVYTQQAVNS QLSALALIQA READVEALSQ 900 LTRALDKKHL QEAVVSELRR MNDEVLENQK GGDNSIKDSD SFKKQYAAVL LQLNEVNEQV 960 SSALFSLRQR NTYQGTSSVR LLKPLAKIGE HGCQLSSFDH SMHHAQESVS HVAEIVESSR 1020 TKARSMVDAA MQAMSSLRKG GKSIERIEDA IDFVNNQLSV DDLSVPAPRS SIPIDSAHST 1080 VTFHDHLTAF VSNPLATGHA PDTKLQNSSD QDDLRIPSDL IVHCVATLLM IQKCTERQFP 1140 PGDVAQVLDS AVTSLKPCCS QNLSIYAEIQ KCMGIIRNQI LALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1187 aa Download sequence Send to blast

MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATVVRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD  120
SEQESNEGVG ASRKPQKRSR GKLRDQPSKS LDKSFPDLLQ FHSAASSYGC LSLLKRRRSE  180
SRPRAVGKRT PRVPISFSHD KNKGERYFSP IRQGMKLKVD TVDDDVAHEI ALVLTEASQR  240
GGSPQVSRTP NRKAEASSPI LNSERMNAES ETTSAKIHGS EMDEDACELS LGSTEADNAD  300
YARGKNYSMN IEGTGTIEVQ QKGKRYYRRK PGVEESVNNH LEDTKEACSG TEEDQKLCDF  360
KGKFEAEVAD TKPSRGSIKG LRKRSKKVLF GRVEDTSFDA LQTLADLSLM MPETAADTES  420
SVQFKEEKNE VVEKTKLKGN HPVSGAKGTA PKTCKQGKVF GHDVRAIPEA KEETHPGNVG  480
MRKRRQKSSP YKLQIPKDET DADSHLGESR NIEALDEVKN FPSKGKRSNN VAHSKQGKSV  540
RPPEHRSSST DHGRDLNNST PSTIQVSPVN QVNLPTKVRS KRKIDAQKQV IGKDIKSSDG  600
IVKGKFSVPV SLFHDRALNL KEKLCNFLCP YQARRWCTFE WFCSTIDYPW FAKREFVEYL  660
DHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLKEEREK LYQYRESVRT HYAELRAGIG  720
EGLPTDLARP LSVGQRVIAI HPKTREIHDG NVLIVDHSRY RIQFDSTELG VESVMDIDCM  780
ALNPLENLPA SLVRQNAAVR KFFENYNELK MNGQPKESKM EENIKFAPCE ENANSPSRTS  840
PSTFSVGNLS QPVKVDPSSP NLQLKVGPME TVYTQQAVNS QLSALALIQA READVEALSQ  900
LTRALDKKHL QEAVVSELRR MNDEVLENQK GGDNSIKDSD SFKKQYAAVL LQLNEVNEQV  960
SSALFSLRQR NTYQGTSSVR LLKPLAKIGE HGCQLSSFDH SMHHAQESVS HVAEIVESSR  1020
TKARSMVDAA MQAMSSLRKG GKSIERIEDA IDFVNNQLSV DDLSVPAPRS SIPIDSAHST  1080
VTFHDHLTAF VSNPLATGHA PDTKLQNSSD QDDLRIPSDL IVHCVATLLM IQKCTERQFP  1140
PGDVAQVLDS AVTSLKPCCS QNLSIYAEIQ KCMGIIRNQI LALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	480	485	MRKRRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035526.2	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A061EQ26	0.0	A0A061EQ26_THECC; Always early, putative isoform 2
STRING	EOY06452	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Thecc1EG021168t2
Entrez Gene	18603464

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]