PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021166t1 | ||||||||
Common Name | TCM_021166 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 49470.5 Da PI: 7.7527 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.1e-12 | 44 | 68 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ Thecc1EG021166t1 44 EADCIYYLRTGFCGYGSRCRFNHPR 68 789********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G +Ck++H++ Thecc1EG021166t1 90 QPVCQYYMRTGTCKFGVSCKYHHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 35.1 | 2.3e-11 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ Thecc1EG021166t1 135 GEKECSYYVKTGQCKFGATCKFHHP 159 7899********************8 PP | |||||||
4 | zf-CCCH | 40 | 6.5e-13 | 295 | 321 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Thecc1EG021166t1 295 PGQPECQYYMKTGDCKYGSSCRYHHPP 321 5789*********************97 PP | |||||||
5 | zf-CCCH | 34 | 5e-11 | 343 | 366 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+++++ G Ck+G+ CkF H+ Thecc1EG021166t1 343 APPCSHYSQRGVCKFGAACKFDHP 366 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.051 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-6 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-6 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-7 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-9 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 139 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.389 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 296 | 321 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 300 | 321 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 340 | 368 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-6 | 340 | 367 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 343 | 366 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 344 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 345 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVMGAGRGG VGEYPERVGQ PVCQYYMRTG TCKFGVSCKY HHPKQGGGSV 120 SSVLLNYYGY PLRPGEKECS YYVKTGQCKF GATCKFHHPA PPAQVPAPSP APPVASVPTP 180 VPAPAIYSTV QSPSGPSSQQ YGVVMARPPL MPGSYMQGHY GPLLLSPGMV SVPSWNPYMA 240 PVSPGTQPTV GSSSIFGVTP LSPSAPAYTG PYLPVPSSVG PSSSSQKEQS FPERPGQPEC 300 QYYMKTGDCK YGSSCRYHHP PEVIAPKADV MLGPLGLPLR PGAPPCSHYS QRGVCKFGAA 360 CKFDHPTGTL SYSPSASSLA DMPVAPYPVG STIGTLAPSS SSSELRPDLI SGSSKDTATA 420 IMSSSVSTLS ESVGSVFSEG APIPQSSIQQ SSQSTAPSTG SGSSSTEGRT SS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017975652.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q6NPN3 | 1e-163 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A061EVZ7 | 0.0 | A0A061EVZ7_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | EOY06449 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-131 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021166t1 |
Entrez Gene | 18603462 |
Publications ? help Back to Top | |||
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