PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021144t1 | ||||||||
Common Name | TCM_021144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26825.6 Da PI: 8.9605 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.2e-09 | 86 | 130 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er RR+++ + ++ L++++P++ +K + +i+ +++ YI+sL+ Thecc1EG021144t1 86 KKERDRREKMAENYDLLQSMVPNL----FPKATREMIVGETIAYIQSLE 130 57*********************8....39*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.007 | 79 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-5 | 85 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 86 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-10 | 87 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-9 | 87 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-4 | 88 | 133 | No hit | No description |
Pfam | PF03189 | 2.1E-5 | 98 | 216 | IPR004878 | Otopetrin |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MQKQRKKERE RKMEDQQNWK GEEEEESEIN ELLCSIMEGY NDKLIPPLSQ FSPSRQAAAA 60 IVEEKGSSSR ERGRAKEAKE VTESLKKERD RREKMAENYD LLQSMVPNLF PKATREMIVG 120 ETIAYIQSLE KEITRMEELK NSSESSKGKM HLYSNRNSSI DVTVSSNVVF FGIQSMVRPR 180 LVTDIFMVLH KHKAEVLGAN VAVNHRQLTL TVTAVVNGNR DRTIEKIKGD ILIL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007035491.1 | 1e-172 | PREDICTED: transcription factor TT8 isoform X2 | ||||
TrEMBL | A0A061EPZ0 | 1e-171 | A0A061EPZ0_THECC; Uncharacterized protein | ||||
STRING | EOY06417 | 1e-171 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27980 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 9e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021144t1 |
Entrez Gene | 18603443 |
Publications ? help Back to Top | |||
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