PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021144t1
Common NameTCM_021144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 235aa    MW: 26825.6 Da    PI: 8.9605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021144t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-0986130755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + Er RR+++ + ++ L++++P++     +K +  +i+ +++ YI+sL+
  Thecc1EG021144t1  86 KKERDRREKMAENYDLLQSMVPNL----FPKATREMIVGETIAYIQSLE 130
                       57*********************8....39*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.00779129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-585135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-686130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1087141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-987142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-488133No hitNo description
PfamPF031892.1E-598216IPR004878Otopetrin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQKQRKKERE RKMEDQQNWK GEEEEESEIN ELLCSIMEGY NDKLIPPLSQ FSPSRQAAAA  60
IVEEKGSSSR ERGRAKEAKE VTESLKKERD RREKMAENYD LLQSMVPNLF PKATREMIVG  120
ETIAYIQSLE KEITRMEELK NSSESSKGKM HLYSNRNSSI DVTVSSNVVF FGIQSMVRPR  180
LVTDIFMVLH KHKAEVLGAN VAVNHRQLTL TVTAVVNGNR DRTIEKIKGD ILIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035491.11e-172PREDICTED: transcription factor TT8 isoform X2
TrEMBLA0A061EPZ01e-171A0A061EPZ0_THECC; Uncharacterized protein
STRINGEOY064171e-171(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2798023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-13bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]