PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021037t2
Common NameTCM_021037
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 267aa    MW: 30995.9 Da    PI: 9.3835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021037t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172169148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll+++v+ +G g+W+++ar    ++R +k+c++rw +yl
  Thecc1EG021037t2 21 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAAgLKRNGKSCRLRWVNYL 69
                      79*********************************************97 PP
2Myb_DNA-binding51.81.9e-1675119147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Thecc1EG021037t2  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                       7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5231669IPR017930Myb domain
SuperFamilySSF466893.28E-3018116IPR009057Homeodomain-like
SMARTSM007174.4E-162071IPR001005SANT/Myb domain
PfamPF002495.2E-162169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-232276IPR009057Homeodomain-like
CDDcd001671.34E-112369No hitNo description
PROSITE profilePS5129424.05870124IPR017930Myb domain
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PfamPF002491.1E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2477123IPR009057Homeodomain-like
CDDcd001676.21E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSWAVMAGHL GWGIIEEGWR KGPWTAEEDR LLIEYVRVHG EGRWNSVARL AAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLSPDN SDKAKARLLK RQQFQQQQLL QQQEQQQQQQ QQQQQQQQLQ LNQFDMKRIM  180
SLLDENEHRA PYVPQLRQEM ATSYPNTTEE QGFFYPMING NVSGSDTSNE EILWDGLWNL  240
DDVHGTFGSA CATSKASLHN LVAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272112427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974784.11e-171PREDICTED: protein ODORANT1
TrEMBLA0A061ENM60.0A0A061ENM6_THECC; Myb domain protein 79 isoform 2
STRINGEOY062371e-169(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.17e-90myb domain protein 305
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]