PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020866t2 | ||||||||
Common Name | TCM_020866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 24584.7 Da PI: 5.739 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.1 | 2.3e-06 | 65 | 111 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+r+N+ + L ++l + + + +K++iL A++ + +L Thecc1EG020866t2 65 TKACRERLRRERLNE-ILDLSSILEPG---RPARTDKSAILDDAIRVLTQL 111 6789**********9.557*******7...789*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-10 | 53 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.306 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-6 | 67 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-8 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDSIEDWDFL DYSFIDENTS PDLLLPNYRE IELSSGNVVH QEKEFEDRDC SRKRGRSGSC 60 SRPGTKACRE RLRRERLNEI LDLSSILEPG RPARTDKSAI LDDAIRVLTQ LRTEAQELKE 120 TNEKLQEEIK SLKAEKNELR EEKLVLKGNK EKIEQQLKTM TIPPAGYLPA HPAAYHPGAS 180 KMAVFPGYGL VPMWQYLPQS ARDTSHDHEL RPPAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 75 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021291403.1 | 1e-150 | transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 5e-84 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A061EMV7 | 1e-157 | A0A061EMV7_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2 | ||||
STRING | EOY06012 | 1e-144 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 1e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020866t2 |
Entrez Gene | 18603198 |