PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020866t1 | ||||||||
Common Name | TCM_020866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 25034.2 Da PI: 5.7435 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.2e-10 | 68 | 115 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+r+N++f L ++l + + + +K++iL A++ + +L Thecc1EG020866t1 68 TKACRERLRRERLNERFLDLSSILEPG---RPARTDKSAILDDAIRVLTQL 115 6789**********************8...789*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.1E-13 | 56 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.275 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-7 | 68 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-11 | 70 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-9 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDSIEDWDFL DYSFIDENTS PDLLLPNYSD GREIELSSGN VVHQEKEFED RDCSRKRGRS 60 GSCSRPGTKA CRERLRRERL NERFLDLSSI LEPGRPARTD KSAILDDAIR VLTQLRTEAQ 120 ELKETNEKLQ EEIKSLKAEK NELREEKLVL KGNKEKIEQQ LKTMTIPPAG YLPAHPAAYH 180 PGASKMAVFP GYGLVPMWQY LPQSARDTSH DHELRPPAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 78 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007035086.1 | 1e-162 | PREDICTED: transcription factor bHLH104 isoform X1 | ||||
Swissprot | Q8L467 | 2e-87 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A061ENR0 | 1e-160 | A0A061ENR0_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1 | ||||
STRING | EOY06012 | 1e-161 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 2e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020866t1 |
Entrez Gene | 18603198 |