PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020818t1 | ||||||||
Common Name | TCM_020818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25992 Da PI: 9.6564 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.4e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Thecc1EG020818t1 61 YTCSFCKREFRSAQALGGHMNVH 83 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-6 | 58 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-6 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0038 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MERNSFSNSL KDHSIGSKAI KDSSSNYDNQ NNFKLKDTRS SNNQGFGEDY LAGFSWPPRS 60 YTCSFCKREF RSAQALGGHM NVHRRDRARL RQSPPRDHGQ PPCLNLNLYP NPNPNPNFSS 120 SSLVSSPFSS TLPSLVSPPL SSLSSSFASP SHEMKKWRVN GTLMDPLSSK GSDSTNMTKG 180 AKSFYGVKEL KDYECNKFLK KTEYVRLDLD LEIGLVSDSK KDLDLELRLG YS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-14 | 56 | 83 | 2 | 29 | superman protein |
2l1o_A | 2e-14 | 56 | 83 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ418471 | 5e-32 | HQ418471.1 Malus x domestica transcriptional regulator superman (SUP5b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007035035.2 | 1e-167 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A061EM84 | 1e-168 | A0A061EM84_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative | ||||
STRING | EOY05961 | 1e-169 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8109 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020818t1 |
Entrez Gene | 18603158 |
Publications ? help Back to Top | |||
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