PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020700t1
Common NameTCM_020700
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 361aa    MW: 41607.7 Da    PI: 4.7847
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020700t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.4e-36411322102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+i++d +++++isws  +nsfvv+d++ f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll
  Thecc1EG020700t1  41 FLTKTYDIIDDTSTNHIISWSGGNNSFVVWDPQAFSMSLLPTYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEKFLRGQRHLL 124
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k+
  Thecc1EG020700t1 125 KNIRRRKT 132
                       ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.74E-3537130IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.9E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6037130IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNPYGRVKEE FPGESSSYPG MPSMATPQPM KGLHDAGPPP FLTKTYDIID DTSTNHIISW  60
SGGNNSFVVW DPQAFSMSLL PTYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEKFLRGQ  120
RHLLKNIRRR KTHPTQASQY ALDPCVEVGR FGLDGEVDRL RRDKEVLMVE LVKLRQQQQN  180
TRTCLQVMEE RLRKTEMKQQ QMMNFLAKAM QNPNFVQQLV QQKDMRKELE EAITKKRRRR  240
IDQWSSSVGN IELGQGEGGG TFVKTEAEDY DDIAEFEVSE LGKLAMDMGL TGSENNIELE  300
HIEEREERGS KDKYLDKWFW DDLLNDGIEQ EISVLDAEDE DGDDVDMLVE QLGYLGSSPK  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-253613212122Heat shock factor protein 1
5d5u_B5e-253613221131Heat shock factor protein 1
5d5v_B5e-253613221131Heat shock factor protein 1
5d5v_D5e-253613221131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239KKRRRR
2235240KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674170.0KR067417.1 Gossypium hirsutum HSF36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034864.20.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-130HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061EL960.0A0A061EL96_THECC; Heat stress transcription factor A-6b, putative
STRINGEOY057900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]